Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CENPUP2-201ENST00000555897 1186 ntBASIC3.34□□□□□ -1.87
SIX2Q9NPC8 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.34□□□□□ -1.87
SIX2Q9NPC8 UBL5P2-201ENST00000583788 219 ntBASIC3.34□□□□□ -1.87
SIX2Q9NPC8 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX2Q9NPC8 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX2Q9NPC8 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.34□□□□□ -1.87
SIX2Q9NPC8 AC091965.4-201ENST00000607691 587 ntBASIC3.34□□□□□ -1.87
SIX2Q9NPC8 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX2Q9NPC8 AL596245.1-201ENST00000618994 362 ntBASIC3.34□□□□□ -1.87
SIX2Q9NPC8 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX2Q9NPC8 AL603839.4-201ENST00000624658 1005 ntBASIC3.34□□□□□ -1.87
SIX2Q9NPC8 MIR6715B-201ENST00000637172 77 ntBASIC3.34□□□□□ -1.87
SIX2Q9NPC8 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
SIX2Q9NPC8 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX2Q9NPC8 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.34□□□□□ -1.87
SIX2Q9NPC8 DCAF13P1-201ENST00000495256 1330 ntBASIC3.34□□□□□ -1.87
SIX2Q9NPC8 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.34□□□□□ -1.88
SIX2Q9NPC8 AC095050.2-201ENST00000510748 1458 ntBASIC3.34□□□□□ -1.88
SIX2Q9NPC8 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.34□□□□□ -1.88
SIX2Q9NPC8 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
SIX2Q9NPC8 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SIX2Q9NPC8 AC092447.10-201ENST00000620607 1652 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 OR1S2-201ENST00000302592 978 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 RNA5SP267-201ENST00000364893 126 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 RNU6-533P-201ENST00000384144 107 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 RNU6-348P-201ENST00000384386 107 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 SNORD67-201ENST00000390833 111 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 MIR1250-201ENST00000408098 113 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC245054.2-201ENST00000415639 319 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AL031779.1-201ENST00000415663 330 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AL031667.1-201ENST00000440222 725 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AL590399.6-201ENST00000446396 307 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 USP9YP12-201ENST00000450481 570 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 UQCRHP3-201ENST00000451503 251 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 MTCO1P42-201ENST00000457379 726 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 RNU7-170P-201ENST00000459303 61 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 SNORD42A-201ENST00000459584 64 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 FTH1P2-201ENST00000466086 412 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC034222.1-201ENST00000494052 532 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC010625.1-201ENST00000511296 403 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC135001.1-201ENST00000544546 283 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AL391156.1-201ENST00000554965 554 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 MIR3186-201ENST00000577404 85 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 MIR4429-201ENST00000580105 73 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC015871.2-201ENST00000603605 948 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 SEPT7P9-203ENST00000604116 343 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AL136363.2-201ENST00000604173 851 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 MIR6798-201ENST00000612887 67 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 AP006248.2-201ENST00000623309 592 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 MTND4P5-201ENST00000435821 1374 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 CCT4P2-201ENST00000233836 1548 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 MTCO1P24-201ENST00000515438 1558 ntBASIC3.33□□□□□ -1.88
SIX2Q9NPC8 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SIX2Q9NPC8 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RNU6-989P-201ENST00000362756 107 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 Y_RNA.234-201ENST00000364409 97 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RNU6-761P-201ENST00000384148 107 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 SNORA54-201ENST00000384281 123 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RNVU1-14-201ENST00000384770 164 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 MT-TC-201ENST00000387405 66 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RNU6-192P-201ENST00000391253 100 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 Y_RNA.598-201ENST00000410480 95 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 MTCYBP24-201ENST00000420387 1106 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RPS6P12-201ENST00000432491 726 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.32□□□□□ -1.88
SIX2Q9NPC8 RPL23AP33-201ENST00000442301 452 ntBASIC3.32□□□□□ -1.88
SIX2Q9NPC8 AL022238.1-201ENST00000442557 355 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms