Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC093249.1-201ENST00000567049 203 ntBASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 MIR4715-201ENST00000584117 79 ntBASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 MIR3171-201ENST00000584270 74 ntBASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 AC008966.2-201ENST00000606157 453 ntBASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 uc_338.5-201ENST00000611839 155 ntBASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 AC233309.1-201ENST00000619522 751 ntBASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 U3.53-201ENST00000628922 216 ntBASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
CLIP3Q96DZ5 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 RPL7P26-201ENST00000333817 754 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 RNU5E-8P-201ENST00000363502 116 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 RNU4-1-201ENST00000363925 141 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 AL109755.1-201ENST00000401791 649 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 MIR548P-201ENST00000408336 84 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 AC127391.1-201ENST00000411737 98 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 RPS15AP12-201ENST00000419498 388 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 UQCRBP1-201ENST00000421129 336 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 AC019097.1-201ENST00000424783 735 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 AC004938.1-201ENST00000438468 308 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 RPS15AP9-201ENST00000439856 381 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 BRK1P2-201ENST00000442875 223 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 RPS11P1-201ENST00000451072 473 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 snoU13.4-201ENST00000458916 104 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 RNU6-261P-201ENST00000459506 102 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 MTCO2P29-201ENST00000465212 189 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 RPL7P19-201ENST00000469948 618 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 PCBP2P3-201ENST00000509726 843 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 RNA5SP401-201ENST00000515920 127 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 Vault.3-201ENST00000516676 95 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 ELOCP31-201ENST00000540463 467 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 MIR3167-201ENST00000579623 85 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 AC012443.1-201ENST00000605605 231 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 AL133173.2-201ENST00000614270 90 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 ZFRP1-201ENST00000457579 2970 ntBASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.44□□□□□ -1.7
CLIP3Q96DZ5 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 XIAPP3-201ENST00000312918 795 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 RPL32P3-201ENST00000359025 275 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 RNU5E-1-201ENST00000362477 120 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 Y_RNA.146-201ENST00000363549 102 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 RNY3P13-201ENST00000365542 102 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 SNORD42.2-201ENST00000365570 69 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 RNU6-474P-201ENST00000384243 107 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AC097374.1-203ENST00000400783 485 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 RNA5SP39-201ENST00000411245 120 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AC004552.1-201ENST00000419089 348 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 ELOCP4-201ENST00000420090 333 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 RPL18P10-201ENST00000425606 538 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 RPL23AP1-201ENST00000428990 471 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 RPS26P3-201ENST00000470205 348 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AC090543.2-201ENST00000483963 348 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AC004057.1-201ENST00000485827 348 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AC025164.1-201ENST00000496249 478 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 Y_RNA.691-201ENST00000516611 103 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AP001781.1-201ENST00000530977 207 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 SCOCP1-201ENST00000554676 349 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 MIR4277-201ENST00000578298 84 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 MIR4697-201ENST00000582977 78 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AC006504.6-201ENST00000590142 199 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AC090617.10-201ENST00000624308 134 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 AC009161.2-201ENST00000624626 138 ntBASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CLIP3Q96DZ5 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms