Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.67□□□□□ -1.66
ERCC4Q92889 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
ERCC4Q92889 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.67□□□□□ -1.66
ERCC4Q92889 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
ERCC4Q92889 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
ERCC4Q92889 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
ERCC4Q92889 RNU6-511P-201ENST00000363496 107 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 Y_RNA.166-201ENST00000363730 102 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.67□□□□□ -1.66
ERCC4Q92889 RNU6-767P-201ENST00000384132 107 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 RNU6-39P-201ENST00000384344 107 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 SNORA70E-201ENST00000384492 135 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
ERCC4Q92889 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
ERCC4Q92889 AL136116.1-201ENST00000403591 381 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 RNU2-62P-201ENST00000410868 191 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 MTCO3P12-201ENST00000416718 547 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.67□□□□□ -1.66
ERCC4Q92889 SRIP2-201ENST00000428470 166 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.67□□□□□ -1.66
ERCC4Q92889 RPS20P5-201ENST00000434808 360 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.67□□□□□ -1.66
ERCC4Q92889 BNIP3P2-201ENST00000441221 577 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 AC093019.1-201ENST00000443135 252 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 AC140076.1-201ENST00000449897 361 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 HMGB3P22-202ENST00000451823 572 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.67□□□□□ -1.66
ERCC4Q92889 AC108059.3-201ENST00000456388 214 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.67□□□□□ -1.66
ERCC4Q92889 AC005798.1-201ENST00000513715 387 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.67□□□□□ -1.66
ERCC4Q92889 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.67□□□□□ -1.66
ERCC4Q92889 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.67□□□□□ -1.66
ERCC4Q92889 COX6CP3-201ENST00000580869 223 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 AC090948.1-201ENST00000607464 549 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 AC128687.2-201ENST00000609657 566 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC4.67□□□□□ -1.66
ERCC4Q92889 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.67□□□□□ -1.66
ERCC4Q92889 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.67□□□□□ -1.66
ERCC4Q92889 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
ERCC4Q92889 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
ERCC4Q92889 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
ERCC4Q92889 RPS4XP5-202ENST00000449995 1334 ntBASIC4.67□□□□□ -1.66
ERCC4Q92889 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
ERCC4Q92889 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
ERCC4Q92889 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
ERCC4Q92889 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
ERCC4Q92889 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
ERCC4Q92889 RNU6-223P-201ENST00000362830 107 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 Y_RNA.142-201ENST00000363491 102 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 RNVU1-3-201ENST00000364313 161 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 U3.11-201ENST00000364476 212 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 Y_RNA.255-201ENST00000364581 97 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 Y_RNA.367-201ENST00000365544 101 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 MIR153-1-201ENST00000384914 90 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
ERCC4Q92889 ELOCP19-201ENST00000411919 318 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 PDCL2P1-201ENST00000419302 352 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 SDCBPP3-201ENST00000419629 891 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC4.66□□□□□ -1.66
ERCC4Q92889 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC4.66□□□□□ -1.66
ERCC4Q92889 PSMA2P3-201ENST00000429685 675 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.66□□□□□ -1.66
ERCC4Q92889 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.66□□□□□ -1.66
ERCC4Q92889 RNU7-63P-201ENST00000459054 62 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 HMGB1P25-201ENST00000468402 607 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 RPL21P103-201ENST00000479921 488 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 RPS3AP50-201ENST00000487064 803 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.66□□□□□ -1.66
ERCC4Q92889 HIGD1AP3-201ENST00000515857 278 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 SNORA70.14-201ENST00000516205 110 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 RNA5SP73-201ENST00000516744 108 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 RPL23AP87-202ENST00000573039 466 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 AC011712.1-201ENST00000588959 234 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 AC020914.4-201ENST00000597690 277 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 AL451044.1-201ENST00000604867 238 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 AL773545.4-201ENST00000637262 310 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 AC112487.2-201ENST00000637950 304 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 AL513478.4-201ENST00000641636 310 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
ERCC4Q92889 AL136964.1-201ENST00000622038 2990 ntBASIC4.66□□□□□ -1.66
ERCC4Q92889 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
ERCC4Q92889 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.66□□□□□ -1.66
ERCC4Q92889 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
ERCC4Q92889 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
ERCC4Q92889 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
ERCC4Q92889 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.65□□□□□ -1.66
ERCC4Q92889 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
ERCC4Q92889 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
ERCC4Q92889 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.65□□□□□ -1.66
ERCC4Q92889 RNU4-73P-201ENST00000363164 141 ntBASIC4.65□□□□□ -1.67
ERCC4Q92889 RNU1-132P-201ENST00000364300 164 ntBASIC4.65□□□□□ -1.67
ERCC4Q92889 RNU4-48P-201ENST00000365559 182 ntBASIC4.65□□□□□ -1.67
ERCC4Q92889 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.67
ERCC4Q92889 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
ERCC4Q92889 Y_RNA.529-201ENST00000384586 119 ntBASIC4.65□□□□□ -1.67
ERCC4Q92889 MIR558-201ENST00000384920 94 ntBASIC4.65□□□□□ -1.67
ERCC4Q92889 MIR1179-201ENST00000408703 91 ntBASIC4.65□□□□□ -1.67
ERCC4Q92889 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.65□□□□□ -1.67
ERCC4Q92889 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms