Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RNU6-1251P-201ENST00000364502 107 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 RNU1-91P-201ENST00000364746 163 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 BTF3L4P2-201ENST00000392798 346 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 RNU6ATAC38P-201ENST00000408119 126 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 RNU6-1328P-201ENST00000410938 106 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 RN7SKP101-201ENST00000411376 320 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 RPL30P13-201ENST00000418873 348 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AL109913.1-201ENST00000421173 514 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 GTF2IP20-201ENST00000431663 360 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AL645568.3-201ENST00000433683 316 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AC007677.1-201ENST00000445757 515 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 RPL12P25-201ENST00000455592 494 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 RNU6-319P-201ENST00000516025 108 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 RN7SKP179-201ENST00000516126 217 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 RPL7P20-201ENST00000520308 745 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 C1GALT1P3-201ENST00000522049 819 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AC022080.3-201ENST00000544433 482 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 HMGB1P14-201ENST00000557424 591 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AC007224.1-201ENST00000564410 144 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 AL078605.1-201ENST00000603529 500 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 MIR7843-201ENST00000622274 79 ntBASIC0.96□□□□□ -2.26
LINC00643Q86TS7 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
LINC00643Q86TS7 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 NUP58P1-201ENST00000502546 1738 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 RNA5SP125-201ENST00000364843 120 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 SNORD65-201ENST00000391079 73 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 MOB4-205ENST00000409916 829 ntTSL 3 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 RNU2-52P-201ENST00000410680 190 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 OFD1P18Y-201ENST00000420889 959 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 TPTE2P6-202ENST00000445572 1007 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 RPL31P58-201ENST00000469001 379 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 SCARNA11.3-201ENST00000517276 130 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 MED28P6-201ENST00000558776 231 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 AC073111.2-201ENST00000605657 1075 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 AC211433.2-201ENST00000608433 387 ntBASIC0.95□□□□□ -2.26
LINC00643Q86TS7 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 WDR75-207ENST00000631047 270 ntTSL 5 BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC0.95□□□□□ -2.26
LINC00643Q86TS7 AC010329.5-201ENST00000623497 2174 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 MTND4P31-201ENST00000425607 1343 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 ZNF29P-201ENST00000225587 168 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 MIR26B-201ENST00000362251 77 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 RNA5SP374-201ENST00000362939 125 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 RNU6-1074P-201ENST00000383995 104 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 AGR3-202ENST00000402239 563 ntTSL 2 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 HMGB1P49-201ENST00000418882 569 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 Z99127.2-201ENST00000441426 334 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 MTCO3P11-201ENST00000455103 774 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 AC021087.2-201ENST00000504656 1203 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 MTND4LP31-201ENST00000514859 294 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 RNU6-1308P-201ENST00000516817 103 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 RNA5SP165-201ENST00000517142 115 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 COX6CP8-201ENST00000522620 226 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 EMP1-206ENST00000537612 505 ntTSL 3 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 AC010186.2-204ENST00000537668 439 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 AC018630.1-201ENST00000541376 925 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 SUB1P3-201ENST00000564581 315 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 AC011260.1-201ENST00000578420 472 ntBASIC0.94□□□□□ -2.26
LINC00643Q86TS7 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC0.94□□□□□ -2.26
LINC00643Q86TS7 CBX3P2-202ENST00000583365 535 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms