Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX1P28360 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.22□□□□□ -1.57
MSX1P28360 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.22□□□□□ -1.57
MSX1P28360 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX1P28360 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.22□□□□□ -1.57
MSX1P28360 PRPF19P1-201ENST00000584766 898 ntBASIC5.22□□□□□ -1.57
MSX1P28360 Y_RNA.772-201ENST00000606692 102 ntBASIC5.22□□□□□ -1.57
MSX1P28360 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 AC093799.2-201ENST00000610062 578 ntBASIC5.22□□□□□ -1.57
MSX1P28360 MIR8076-201ENST00000611401 83 ntBASIC5.22□□□□□ -1.57
MSX1P28360 MIR6798-201ENST00000612887 67 ntBASIC5.22□□□□□ -1.57
MSX1P28360 CENPF-206ENST00000614578 528 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.22□□□□□ -1.57
MSX1P28360 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
MSX1P28360 LINC01963-201ENST00000562038 3148 ntBASIC5.22□□□□□ -1.57
MSX1P28360 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
MSX1P28360 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX1P28360 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX1P28360 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
MSX1P28360 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.57
MSX1P28360 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
MSX1P28360 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
MSX1P28360 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
MSX1P28360 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
MSX1P28360 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
MSX1P28360 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.58
MSX1P28360 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX1P28360 AL096701.2-201ENST00000416920 238 ntBASIC5.21□□□□□ -1.58
MSX1P28360 AF186996.5-201ENST00000418098 904 ntBASIC5.21□□□□□ -1.58
MSX1P28360 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX1P28360 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX1P28360 AL591043.1-201ENST00000432461 424 ntBASIC5.21□□□□□ -1.58
MSX1P28360 AC073587.1-201ENST00000447093 876 ntBASIC5.21□□□□□ -1.58
MSX1P28360 RPS11P1-201ENST00000451072 473 ntBASIC5.21□□□□□ -1.58
MSX1P28360 AC109925.1-201ENST00000478069 331 ntBASIC5.21□□□□□ -1.58
MSX1P28360 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX1P28360 RPL32P33-201ENST00000487023 394 ntBASIC5.21□□□□□ -1.58
MSX1P28360 HMGN1P11-201ENST00000508668 303 ntBASIC5.21□□□□□ -1.58
MSX1P28360 RNU1-86P-201ENST00000516108 154 ntBASIC5.21□□□□□ -1.58
MSX1P28360 RNU1-107P-201ENST00000516617 154 ntBASIC5.21□□□□□ -1.58
MSX1P28360 RNU6-840P-201ENST00000517275 65 ntBASIC5.21□□□□□ -1.58
MSX1P28360 AL590705.4-201ENST00000532209 134 ntBASIC5.21□□□□□ -1.58
MSX1P28360 AC025884.1-201ENST00000556034 378 ntBASIC5.21□□□□□ -1.58
MSX1P28360 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX1P28360 AC072026.1-201ENST00000605023 201 ntBASIC5.21□□□□□ -1.58
MSX1P28360 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX1P28360 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.21□□□□□ -1.58
MSX1P28360 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX1P28360 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX1P28360 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.58
MSX1P28360 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX1P28360 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX1P28360 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX1P28360 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX1P28360 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
MSX1P28360 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC5.21□□□□□ -1.58
MSX1P28360 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX1P28360 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.21□□□□□ -1.58
MSX1P28360 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX1P28360 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX1P28360 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX1P28360 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX1P28360 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX1P28360 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
MSX1P28360 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
MSX1P28360 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.2□□□□□ -1.58
MSX1P28360 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
MSX1P28360 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
MSX1P28360 SNORA58B-201ENST00000364259 136 ntBASIC5.2□□□□□ -1.58
MSX1P28360 Y_RNA.358-201ENST00000365491 99 ntBASIC5.2□□□□□ -1.58
MSX1P28360 RNU6-81P-201ENST00000365608 104 ntBASIC5.2□□□□□ -1.58
MSX1P28360 RNY3P4-201ENST00000384428 101 ntBASIC5.2□□□□□ -1.58
MSX1P28360 MIR130A-201ENST00000385274 89 ntBASIC5.2□□□□□ -1.58
MSX1P28360 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
MSX1P28360 MIR190B-201ENST00000401119 79 ntBASIC5.2□□□□□ -1.58
MSX1P28360 Y_RNA.602-201ENST00000410535 92 ntBASIC5.2□□□□□ -1.58
MSX1P28360 RN7SKP17-201ENST00000411242 351 ntBASIC5.2□□□□□ -1.58
MSX1P28360 Y_RNA.626-201ENST00000411288 95 ntBASIC5.2□□□□□ -1.58
MSX1P28360 AC017079.2-201ENST00000416102 485 ntBASIC5.2□□□□□ -1.58
MSX1P28360 CYCSP10-201ENST00000417973 294 ntBASIC5.2□□□□□ -1.58
MSX1P28360 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX1P28360 RPL26P6-201ENST00000440913 438 ntBASIC5.2□□□□□ -1.58
MSX1P28360 RPL12P39-201ENST00000455456 496 ntBASIC5.2□□□□□ -1.58
MSX1P28360 snoU13.29-201ENST00000459370 104 ntBASIC5.2□□□□□ -1.58
MSX1P28360 RN7SL610P-201ENST00000463845 291 ntBASIC5.2□□□□□ -1.58
MSX1P28360 RN7SL189P-201ENST00000468631 289 ntBASIC5.2□□□□□ -1.58
MSX1P28360 COX6CP14-201ENST00000469580 174 ntBASIC5.2□□□□□ -1.58
MSX1P28360 AC010683.1-201ENST00000473673 378 ntBASIC5.2□□□□□ -1.58
MSX1P28360 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.2□□□□□ -1.58
MSX1P28360 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms