Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC008427.1-201ENST00000503102 655 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 MIR4658-201ENST00000584344 65 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 VN1R88P-201ENST00000596787 292 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC009314.1-201ENST00000603871 304 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC010738.1-201ENST00000604970 987 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC026790.2-201ENST00000606282 430 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC092954.1-201ENST00000609121 445 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC245884.12-201ENST00000615364 59 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AL450472.3-201ENST00000615578 367 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 AL590396.2-201ENST00000636511 1041 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 TPTE2P4-201ENST00000258589 1605 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC42Q96M95 AC025263.3-201ENST00000622965 1396 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC42Q96M95 RNA5SP138-201ENST00000365098 114 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 RNU6-1197P-201ENST00000391183 107 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 U3.40-201ENST00000408706 208 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 RNA5SP338-201ENST00000410495 85 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 RNU4-72P-201ENST00000410754 173 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 PTP4A1P7-201ENST00000423476 514 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 RPL7L1P10-201ENST00000427790 463 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 AC012497.1-201ENST00000429392 575 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 ARPC3P1-201ENST00000437218 533 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 AL445687.1-201ENST00000439946 251 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 OR52A4P-202ENST00000481634 799 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 OR9N1P-202ENST00000494289 481 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 OR52A4P-203ENST00000498233 1014 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC2.26□□□□□ -2.05
CCDC42Q96M95 AC068339.2-201ENST00000534395 618 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 GLYCAM1-201ENST00000546596 285 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 LSM6P2-201ENST00000552208 177 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 RPS3AP23-202ENST00000574601 686 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 DNAJC19P3-201ENST00000594491 331 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 AP000254.1-201ENST00000609934 520 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 AL109809.4-201ENST00000603520 2185 ntBASIC2.26□□□□□ -2.05
CCDC42Q96M95 MTCO1P18-201ENST00000455518 1419 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 NUP58P1-201ENST00000502546 1738 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 HMGB1P5-201ENST00000255320 642 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 SNORA68.1-201ENST00000364537 132 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 SNORD82-201ENST00000365530 70 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 SNORA11-201ENST00000408789 128 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC42Q96M95 AC092573.2-201ENST00000434546 243 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 HIGD1AP2-201ENST00000446367 280 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 WASF1P1-201ENST00000447560 1131 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 AC233279.1-201ENST00000455300 423 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 snoU13.28-201ENST00000459235 104 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC42Q96M95 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC42Q96M95 AC104108.1-201ENST00000509930 412 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC42Q96M95 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC2.25□□□□□ -2.05
CCDC42Q96M95 NDUFS5P6-201ENST00000529136 295 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 TRAV28-201ENST00000557548 323 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 AC090888.1-201ENST00000561335 1141 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC42Q96M95 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC2.25□□□□□ -2.05
CCDC42Q96M95 MIR4448-201ENST00000584360 86 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.25□□□□□ -2.05
CCDC42Q96M95 AC243829.7-201ENST00000633081 225 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC42Q96M95 AC008568.2-201ENST00000623862 2313 ntBASIC2.25□□□□□ -2.05
CCDC42Q96M95 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC42Q96M95 ZNF658B-202ENST00000615961 3375 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 RNA5SP289-201ENST00000362332 137 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 RNU6-252P-201ENST00000363232 107 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 RNU1-91P-201ENST00000364746 163 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 AL355497.1-201ENST00000406262 551 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 BTF3P7-201ENST00000407097 488 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 ZNF92P1Y-201ENST00000415010 1191 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 UBE2V1P13-201ENST00000436983 439 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.24□□□□□ -2.05
CCDC42Q96M95 AL139109.1-201ENST00000455491 297 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 AC017007.3-201ENST00000479865 435 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC42Q96M95 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 SNRPGP18-201ENST00000553000 214 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC42Q96M95 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC42Q96M95 AL390838.2-201ENST00000602394 274 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 AL356280.1-201ENST00000603614 379 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 AL022099.1-201ENST00000604551 712 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 APOOP1-201ENST00000604695 592 ntBASIC2.24□□□□□ -2.05
CCDC42Q96M95 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms