Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC073349.3-201ENST00000617616 186 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 AC110801.1-201ENST00000623590 212 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.97□□□□□ -1.61
COL8A1P27658 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
COL8A1P27658 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC4.97□□□□□ -1.61
COL8A1P27658 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC4.97□□□□□ -1.61
COL8A1P27658 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
COL8A1P27658 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL8A1P27658 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
COL8A1P27658 AC233981.2-201ENST00000611524 1614 ntBASIC4.97□□□□□ -1.61
COL8A1P27658 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC4.96□□□□□ -1.61
COL8A1P27658 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL8A1P27658 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC4.96□□□□□ -1.62
COL8A1P27658 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL8A1P27658 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL8A1P27658 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL8A1P27658 AC126755.2-208ENST00000327792 462 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AC138969.1-213ENST00000331436 462 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 UBE2WP1-201ENST00000362030 340 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 RNU6-371P-201ENST00000364283 108 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 RNU6-80P-201ENST00000384195 107 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 SNORA51.8-201ENST00000384234 132 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 MIR186-201ENST00000384988 86 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 SNORD78.2-201ENST00000391076 69 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 Y_RNA.623-201ENST00000411128 95 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AC245028.1-201ENST00000423259 256 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 PTGES3P4-201ENST00000426243 356 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AC022022.1-201ENST00000430304 178 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC4.96□□□□□ -1.62
COL8A1P27658 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC4.96□□□□□ -1.62
COL8A1P27658 GAPDHP27-201ENST00000447427 1020 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC4.96□□□□□ -1.62
COL8A1P27658 RPS11P1-201ENST00000451072 473 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AC007395.1-201ENST00000451333 677 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AL137159.1-201ENST00000452808 512 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 SDC4P-201ENST00000453285 601 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 SNRPCP2-201ENST00000504370 475 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.96□□□□□ -1.62
COL8A1P27658 AP005660.1-201ENST00000522972 293 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.96□□□□□ -1.62
COL8A1P27658 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC4.96□□□□□ -1.62
COL8A1P27658 MIR3189-201ENST00000578735 73 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AC119403.2-201ENST00000590960 598 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 SNORD113-5-201ENST00000607261 78 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 RNU6-84P-201ENST00000607737 102 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AC006329.2-201ENST00000611491 394 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL8A1P27658 MIR6758-201ENST00000620653 63 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AL031601.2-202ENST00000622650 282 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 MIR7641-1-201ENST00000627518 61 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC4.96□□□□□ -1.62
COL8A1P27658 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC4.96□□□□□ -1.62
COL8A1P27658 AC007938.2-201ENST00000604666 2634 ntBASIC4.96□□□□□ -1.62
COL8A1P27658 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
COL8A1P27658 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC4.96□□□□□ -1.62
COL8A1P27658 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL8A1P27658 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.96□□□□□ -1.62
COL8A1P27658 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC4.96□□□□□ -1.62
COL8A1P27658 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL8A1P27658 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC4.95□□□□□ -1.62
COL8A1P27658 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL8A1P27658 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
COL8A1P27658 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL8A1P27658 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL8A1P27658 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
COL8A1P27658 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL8A1P27658 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL8A1P27658 SNORA25.1-201ENST00000362326 128 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 RNU6-1056P-201ENST00000383996 107 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 RNU6-637P-201ENST00000384050 107 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 DUTP5-201ENST00000406790 469 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 RNA5SP487-201ENST00000410186 122 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.95□□□□□ -1.62
COL8A1P27658 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.95□□□□□ -1.62
COL8A1P27658 AC069213.2-201ENST00000420238 366 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 MTATP6P4-201ENST00000427725 675 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC4.95□□□□□ -1.62
COL8A1P27658 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.95□□□□□ -1.62
COL8A1P27658 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.95□□□□□ -1.62
COL8A1P27658 AL389915.2-201ENST00000454576 441 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 Z92846.1-201ENST00000456203 268 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 SNORD2.1-201ENST00000458762 69 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 RPL21P41-201ENST00000459863 264 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
COL8A1P27658 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.95□□□□□ -1.62
COL8A1P27658 RNA5SP272-201ENST00000516095 111 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 Y_RNA.686-201ENST00000516548 134 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 RNU6-677P-201ENST00000516914 101 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 RNU6-971P-201ENST00000516920 106 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 AP000859.1-201ENST00000525536 307 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 AL590705.4-201ENST00000532209 134 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 AP002001.1-203ENST00000534002 267 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 AC073916.1-201ENST00000545095 130 ntBASIC4.95□□□□□ -1.62
COL8A1P27658 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.95□□□□□ -1.62
COL8A1P27658 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.95□□□□□ -1.62
COL8A1P27658 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms