Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 Y_RNA.77-201ENST00000362962 107 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 Y_RNA.436-201ENST00000384097 102 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 SNORA5A-201ENST00000384111 134 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 MIR135A2-201ENST00000384854 100 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 U3.26-201ENST00000391236 204 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 UBE2V1P13-201ENST00000436983 439 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 SKP1P1-201ENST00000438081 489 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 HMGB1P37-201ENST00000439613 609 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 MTCO1P19-201ENST00000443487 500 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 RAC1P7-201ENST00000445367 377 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 USP9YP12-201ENST00000450481 570 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 RNU6-956P-201ENST00000458868 103 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 RPS23P3-201ENST00000470993 430 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AF213884.1-201ENST00000488102 463 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 RNU6-1095P-201ENST00000516148 108 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 RNU6-528P-201ENST00000516926 100 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AP003497.1-201ENST00000528472 562 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AP000907.2-201ENST00000530827 353 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AL133271.1-201ENST00000538229 291 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AC120057.2-201ENST00000571520 271 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AL158211.4-201ENST00000606988 584 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 U3.45-201ENST00000607547 219 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 OR10AB1P-201ENST00000609613 938 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AL110115.1-201ENST00000614396 364 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AL359757.2-201ENST00000624309 274 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AC090582.1-201ENST00000636321 199 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 MTND4P4-201ENST00000439033 1366 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AC118273.1-201ENST00000525324 3006 ntBASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.89
PDLIM3Q53GG5 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
PDLIM3Q53GG5 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
PDLIM3Q53GG5 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 RNU1-18P-201ENST00000363062 164 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 RNU6-1078P-201ENST00000364522 103 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 U3.20-201ENST00000390909 217 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 SNORA48.2-201ENST00000390926 124 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 RPS20P2-201ENST00000402520 389 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 RPS29P4-201ENST00000414733 161 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 EZH2P1-201ENST00000431167 291 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 MTND1P28-201ENST00000435623 950 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 HIGD1AP11-201ENST00000438361 280 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AC099563.1-201ENST00000456086 418 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 MLLT10P2-201ENST00000506434 249 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 IGHV3-76-201ENST00000522465 295 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 ZNF519P3-201ENST00000557158 1032 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AC025627.2-201ENST00000576220 160 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 MIR7975-201ENST00000619350 68 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 AL360181.4-201ENST00000621752 134 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 MIR3651-201ENST00000630427 90 ntBASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
PDLIM3Q53GG5 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms