Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PRRC2CP1-201ENST00000404428 159 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 AP000275.1-201ENST00000411943 390 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC2.44□□□□□ -2.02
COL18A1P39060 HMGB1P45-201ENST00000435986 653 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 RPL23AP58-201ENST00000440453 469 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC2.44□□□□□ -2.02
COL18A1P39060 RPL39P40-201ENST00000445481 146 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 GTF2IP9-201ENST00000502460 301 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
COL18A1P39060 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC2.44□□□□□ -2.02
COL18A1P39060 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC2.44□□□□□ -2.02
COL18A1P39060 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC2.44□□□□□ -2.02
COL18A1P39060 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.44□□□□□ -2.02
COL18A1P39060 AC233266.2-201ENST00000567067 528 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.44□□□□□ -2.02
COL18A1P39060 BX322635.1-201ENST00000605804 496 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 AL353748.2-201ENST00000622148 471 ntBASIC2.44□□□□□ -2.02
COL18A1P39060 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC2.44□□□□□ -2.02
COL18A1P39060 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
COL18A1P39060 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
COL18A1P39060 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.43□□□□□ -2.02
COL18A1P39060 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
COL18A1P39060 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL18A1P39060 RNU2-20P-201ENST00000410425 191 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 RNU2-71P-201ENST00000411395 189 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC2.43□□□□□ -2.02
COL18A1P39060 AC073310.1-201ENST00000423226 1033 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.43□□□□□ -2.02
COL18A1P39060 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
COL18A1P39060 AL590762.3-201ENST00000436372 640 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.43□□□□□ -2.02
COL18A1P39060 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.43□□□□□ -2.02
COL18A1P39060 AL513343.1-201ENST00000451818 792 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC2.43□□□□□ -2.02
COL18A1P39060 RNU6-751P-201ENST00000516382 101 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 SNORA48.9-201ENST00000516419 162 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 AC104115.2-201ENST00000523026 687 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.43□□□□□ -2.02
COL18A1P39060 RPS3AP23-202ENST00000574601 686 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 AC103810.1-201ENST00000579873 453 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 AC009314.1-201ENST00000603871 304 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 AC005156.1-201ENST00000613371 573 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 STMN1P1-201ENST00000617809 440 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 AC090897.3-201ENST00000636973 1157 ntBASIC2.43□□□□□ -2.02
COL18A1P39060 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL18A1P39060 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
COL18A1P39060 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.42□□□□□ -2.02
COL18A1P39060 AF274854.1-201ENST00000413236 615 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 TATDN1P1-201ENST00000414123 891 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 FNDC3CP-201ENST00000420795 1155 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 CR848007.2-201ENST00000424918 787 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 AC068135.1-201ENST00000446164 246 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC2.42□□□□□ -2.02
COL18A1P39060 MTND3P4-201ENST00000453537 303 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC2.42□□□□□ -2.02
COL18A1P39060 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC2.42□□□□□ -2.02
COL18A1P39060 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC2.42□□□□□ -2.02
COL18A1P39060 MLLT10P2-201ENST00000506434 249 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC2.42□□□□□ -2.02
COL18A1P39060 CBX3P4-201ENST00000538909 354 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 VIS1.1-201ENST00000610517 203 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 AL110115.1-201ENST00000614396 364 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 U73479.1-201ENST00000618062 168 ntBASIC2.42□□□□□ -2.02
COL18A1P39060 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
COL18A1P39060 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.42□□□□□ -2.02
COL18A1P39060 MIR591-201ENST00000385290 95 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 RPS15AP12-201ENST00000419498 388 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 AC004865.1-201ENST00000442276 1003 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.41□□□□□ -2.02
COL18A1P39060 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.41□□□□□ -2.02
COL18A1P39060 AC008885.2-201ENST00000509506 930 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 SNORA25.15-201ENST00000516487 89 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.41□□□□□ -2.02
COL18A1P39060 RPS3AP4-201ENST00000555161 764 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.41□□□□□ -2.02
COL18A1P39060 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.41□□□□□ -2.02
COL18A1P39060 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.41□□□□□ -2.02
COL18A1P39060 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC2.41□□□□□ -2.02
COL18A1P39060 AC010872.1-201ENST00000624225 675 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 AC017104.5-201ENST00000637647 639 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL18A1P39060 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.41□□□□□ -2.02
COL18A1P39060 Z82209.1-201ENST00000422141 2135 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.41□□□□□ -2.02
COL18A1P39060 RNU6-1293P-201ENST00000384077 107 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
COL18A1P39060 AP000567.1-201ENST00000406413 156 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 RNA5SP338-201ENST00000410495 85 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 EIF1AXP1-201ENST00000419267 435 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 MTND4LP7-201ENST00000431728 294 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 TRIM60P13-201ENST00000432350 1283 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.41□□□□□ -2.02
COL18A1P39060 RPS27P5-201ENST00000444247 244 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.41□□□□□ -2.02
COL18A1P39060 CDC42P1-201ENST00000456658 548 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 NF1P3-201ENST00000457709 450 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 AC010265.1-201ENST00000513509 211 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.41□□□□□ -2.02
COL18A1P39060 AC117532.1-201ENST00000514638 323 ntBASIC2.41□□□□□ -2.02
COL18A1P39060 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms