Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 SNORA70G-201ENST00000383923 142 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 MIR518D-201ENST00000385014 87 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 AC004866.1-201ENST00000411748 78 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC9.96□□□□□ -0.82
SENP3Q9H4L4 AL356867.1-201ENST00000429623 299 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC9.96□□□□□ -0.82
SENP3Q9H4L4 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC9.96□□□□□ -0.82
SENP3Q9H4L4 AC090525.1-201ENST00000479116 478 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 RPL10P18-201ENST00000519384 309 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 RPL23AP91-201ENST00000569211 455 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 AC008507.4-201ENST00000585464 127 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 AP005212.3-201ENST00000619964 528 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 MIR3529-201ENST00000637713 78 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 AC079776.5-201ENST00000641920 211 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC9.96□□□□□ -0.82
SENP3Q9H4L4 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
SENP3Q9H4L4 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
SENP3Q9H4L4 AL589993.1-201ENST00000407450 2524 ntBASIC9.96□□□□□ -0.82
SENP3Q9H4L4 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
SENP3Q9H4L4 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC9.96□□□□□ -0.82
SENP3Q9H4L4 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
SENP3Q9H4L4 BDNF-201ENST00000314915 4340 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
SENP3Q9H4L4 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 ZNF137P-201ENST00000456718 1920 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 PPIAP22-201ENST00000358455 498 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 RNU6-887P-201ENST00000410660 100 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 AL603650.1-201ENST00000412680 240 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 FAR2P2-201ENST00000413041 594 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 RPL23AP82-202ENST00000427528 469 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 RPL23AP7-203ENST00000449021 469 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 CENPBD1P1-201ENST00000464061 469 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 RN7SL174P-201ENST00000475578 289 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 RN7SL379P-201ENST00000479912 293 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 RPL36AP21-201ENST00000490372 323 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 Y_RNA.705-201ENST00000516862 110 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 IGLVV-66-201ENST00000523818 341 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 MIAT_exon5_1.1-201ENST00000618919 149 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 AL592437.2-201ENST00000421655 2434 ntBASIC9.95□□□□□ -0.82
SENP3Q9H4L4 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC9.95□□□□□ -0.82
SENP3Q9H4L4 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 IRAK4-201ENST00000431837 4147 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 CCDC129-205ENST00000451887 3611 ntAPPRIS ALT2 TSL 2 BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 PHKBP1-201ENST00000450951 1951 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 SNORD113.2-201ENST00000364166 89 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 Y_RNA.298-201ENST00000364960 107 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 Y_RNA.486-201ENST00000384398 107 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 RNU6-141P-201ENST00000410499 105 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 AC079355.1-201ENST00000421770 223 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 AL590128.1-201ENST00000433407 286 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 RN7SL180P-201ENST00000466769 294 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 AC093259.1-201ENST00000509755 300 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 AC096725.1-201ENST00000514266 313 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 SCARNA15-202ENST00000516881 127 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 IGKV2-19-201ENST00000518132 283 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 MIR4662B-201ENST00000579498 81 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 RPL7AP69-201ENST00000595306 806 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 AC011445.2-201ENST00000599274 173 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 uc_338.31-201ENST00000615595 186 ntBASIC9.94□□□□□ -0.82
SENP3Q9H4L4 ZNF544-206ENST00000596652 2818 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 ZNF544-217ENST00000600220 2837 ntAPPRIS ALT2 TSL 3 BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 SLC3A1-204ENST00000409380 2424 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 SHROOM4-202ENST00000376020 9556 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC9.94□□□□□ -0.82
SENP3Q9H4L4 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 FLG-AS1-202ENST00000392688 2995 ntTSL 2 BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 MORC1-202ENST00000483760 3056 ntAPPRIS ALT2 TSL 2 BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 SNURFL-201ENST00000309296 343 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 SNORD114-7-201ENST00000362520 77 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 RNU6-944P-201ENST00000364023 107 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 RNU6-690P-201ENST00000365242 106 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 RNA5SP77-201ENST00000365394 120 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 RPSAP50-201ENST00000481955 852 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC9.93□□□□□ -0.82
SENP3Q9H4L4 Y_RNA.666-201ENST00000516187 112 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 RNU6-1183P-201ENST00000517054 60 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 IGHV4-55-201ENST00000520889 368 ntBASIC9.93□□□□□ -0.82
SENP3Q9H4L4 AC007537.1-201ENST00000539347 327 ntBASIC9.93□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms