Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AL161912.2-201ENST00000565707 3007 ntBASIC3.3□□□□□ -1.88
VIMP08670 AL353743.1-202ENST00000431724 1695 ntBASIC3.3□□□□□ -1.88
VIMP08670 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VIMP08670 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.3□□□□□ -1.88
VIMP08670 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.3□□□□□ -1.88
VIMP08670 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VIMP08670 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.3□□□□□ -1.88
VIMP08670 RNU5A-1-201ENST00000362698 116 ntBASIC3.3□□□□□ -1.88
VIMP08670 RNA5SP197-201ENST00000363357 119 ntBASIC3.3□□□□□ -1.88
VIMP08670 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.3□□□□□ -1.88
VIMP08670 RNU6-637P-201ENST00000384050 107 ntBASIC3.3□□□□□ -1.88
VIMP08670 RNU6-253P-201ENST00000384730 105 ntBASIC3.3□□□□□ -1.88
VIMP08670 ATP5F1P3-201ENST00000397213 657 ntBASIC3.3□□□□□ -1.88
VIMP08670 RN7SKP156-201ENST00000410308 342 ntBASIC3.3□□□□□ -1.88
VIMP08670 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
VIMP08670 AC233728.2-201ENST00000425348 757 ntBASIC3.3□□□□□ -1.88
VIMP08670 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.3□□□□□ -1.88
VIMP08670 AC104332.2-201ENST00000429959 156 ntBASIC3.3□□□□□ -1.88
VIMP08670 MTND1P20-201ENST00000430341 950 ntBASIC3.3□□□□□ -1.88
VIMP08670 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.3□□□□□ -1.88
VIMP08670 SNRPEP4-201ENST00000435815 279 ntBASIC3.3□□□□□ -1.88
VIMP08670 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.3□□□□□ -1.88
VIMP08670 AL591503.2-201ENST00000442314 1005 ntBASIC3.3□□□□□ -1.88
VIMP08670 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.3□□□□□ -1.88
VIMP08670 OR6C5P-201ENST00000452388 923 ntBASIC3.3□□□□□ -1.88
VIMP08670 AC034222.1-201ENST00000494052 532 ntBASIC3.3□□□□□ -1.88
VIMP08670 AC112198.1-201ENST00000505369 1220 ntBASIC3.3□□□□□ -1.88
VIMP08670 LTV1P1-201ENST00000510683 1237 ntBASIC3.3□□□□□ -1.88
VIMP08670 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VIMP08670 SNORA3.4-201ENST00000515969 96 ntBASIC3.3□□□□□ -1.88
VIMP08670 RNU6-56P-201ENST00000516986 93 ntBASIC3.3□□□□□ -1.88
VIMP08670 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.3□□□□□ -1.88
VIMP08670 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.3□□□□□ -1.88
VIMP08670 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.3□□□□□ -1.88
VIMP08670 MIR3921-201ENST00000577308 85 ntBASIC3.3□□□□□ -1.88
VIMP08670 MIR5685-201ENST00000579080 79 ntBASIC3.3□□□□□ -1.88
VIMP08670 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.3□□□□□ -1.88
VIMP08670 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.3□□□□□ -1.88
VIMP08670 AC021171.1-201ENST00000603137 706 ntBASIC3.3□□□□□ -1.88
VIMP08670 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.3□□□□□ -1.88
VIMP08670 uc_338.1-201ENST00000612113 180 ntBASIC3.3□□□□□ -1.88
VIMP08670 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.3□□□□□ -1.88
VIMP08670 SNORD39.4-201ENST00000620099 78 ntBASIC3.3□□□□□ -1.88
VIMP08670 AL161637.1-201ENST00000622380 412 ntBASIC3.3□□□□□ -1.88
VIMP08670 PCMTD1P7-201ENST00000634506 357 ntBASIC3.3□□□□□ -1.88
VIMP08670 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
VIMP08670 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VIMP08670 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VIMP08670 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VIMP08670 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
VIMP08670 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VIMP08670 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VIMP08670 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VIMP08670 CUL1P1-201ENST00000509510 2425 ntBASIC3.29□□□□□ -1.88
VIMP08670 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VIMP08670 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VIMP08670 SNORD9-201ENST00000362566 104 ntBASIC3.29□□□□□ -1.88
VIMP08670 U3.20-201ENST00000390909 217 ntBASIC3.29□□□□□ -1.88
VIMP08670 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
VIMP08670 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.29□□□□□ -1.88
VIMP08670 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.29□□□□□ -1.88
VIMP08670 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.29□□□□□ -1.88
VIMP08670 UBE2V1P13-201ENST00000436983 439 ntBASIC3.29□□□□□ -1.88
VIMP08670 AL606662.1-201ENST00000445763 553 ntBASIC3.29□□□□□ -1.88
VIMP08670 AC104978.1-201ENST00000449387 391 ntBASIC3.29□□□□□ -1.88
VIMP08670 RPL36AP33-201ENST00000450395 310 ntBASIC3.29□□□□□ -1.88
VIMP08670 MTND1P9-201ENST00000453775 944 ntBASIC3.29□□□□□ -1.88
VIMP08670 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.29□□□□□ -1.88
VIMP08670 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.29□□□□□ -1.88
VIMP08670 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.29□□□□□ -1.88
VIMP08670 AL049714.1-201ENST00000466686 347 ntBASIC3.29□□□□□ -1.88
VIMP08670 HSPE1P6-201ENST00000479457 291 ntBASIC3.29□□□□□ -1.88
VIMP08670 AC106872.3-201ENST00000495104 446 ntBASIC3.29□□□□□ -1.88
VIMP08670 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.29□□□□□ -1.88
VIMP08670 AC022447.3-201ENST00000506865 495 ntBASIC3.29□□□□□ -1.88
VIMP08670 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.29□□□□□ -1.88
VIMP08670 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.29□□□□□ -1.88
VIMP08670 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.29□□□□□ -1.88
VIMP08670 ELOCP32-201ENST00000548625 324 ntBASIC3.29□□□□□ -1.88
VIMP08670 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.29□□□□□ -1.88
VIMP08670 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.29□□□□□ -1.88
VIMP08670 AC136624.4-201ENST00000573044 370 ntBASIC3.29□□□□□ -1.88
VIMP08670 UBE2L4-201ENST00000587688 464 ntBASIC3.29□□□□□ -1.88
VIMP08670 VN1R90P-201ENST00000595717 726 ntBASIC3.29□□□□□ -1.88
VIMP08670 BNIP3P23-201ENST00000599655 511 ntBASIC3.29□□□□□ -1.88
VIMP08670 AC069234.5-201ENST00000611056 416 ntBASIC3.29□□□□□ -1.88
VIMP08670 MIR6875-201ENST00000617506 72 ntBASIC3.29□□□□□ -1.88
VIMP08670 AL603758.1-201ENST00000618654 241 ntBASIC3.29□□□□□ -1.88
VIMP08670 AL158801.5-201ENST00000623123 465 ntBASIC3.29□□□□□ -1.88
VIMP08670 AC090617.7-201ENST00000623952 126 ntBASIC3.29□□□□□ -1.88
VIMP08670 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.29□□□□□ -1.88
VIMP08670 AC244258.1-201ENST00000637553 1071 ntBASIC3.29□□□□□ -1.88
VIMP08670 AL392088.2-201ENST00000637607 285 ntBASIC3.29□□□□□ -1.88
VIMP08670 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VIMP08670 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VIMP08670 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
VIMP08670 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.29□□□□□ -1.88
VIMP08670 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VIMP08670 AC104454.1-201ENST00000421341 1401 ntBASIC3.28□□□□□ -1.88
VIMP08670 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 142 ms