Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 Y_RNA.673-201ENST00000516306 88 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 AP001330.4-201ENST00000604350 154 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 AC009032.1-201ENST00000617574 431 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 AC090617.9-201ENST00000623751 147 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.82□□□□□ -1.96
USP42Q9H9J4 MTND5P29-201ENST00000458676 1807 ntBASIC2.82□□□□□ -1.96
USP42Q9H9J4 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.81□□□□□ -1.96
USP42Q9H9J4 HSPA8P4-201ENST00000511877 1920 ntBASIC2.81□□□□□ -1.96
USP42Q9H9J4 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
USP42Q9H9J4 RNU6-989P-201ENST00000362756 107 ntBASIC2.81□□□□□ -1.96
USP42Q9H9J4 RNU6-1159P-201ENST00000362933 107 ntBASIC2.81□□□□□ -1.96
USP42Q9H9J4 Y_RNA.238-201ENST00000364441 102 ntBASIC2.81□□□□□ -1.96
USP42Q9H9J4 RNU6-339P-201ENST00000384310 107 ntBASIC2.81□□□□□ -1.96
USP42Q9H9J4 AL121882.1-201ENST00000422893 417 ntBASIC2.81□□□□□ -1.96
USP42Q9H9J4 UBE2D3P2-201ENST00000424409 445 ntBASIC2.81□□□□□ -1.96
USP42Q9H9J4 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.81□□□□□ -1.96
USP42Q9H9J4 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.81□□□□□ -1.96
USP42Q9H9J4 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.81□□□□□ -1.96
USP42Q9H9J4 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
USP42Q9H9J4 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.81□□□□□ -1.96
USP42Q9H9J4 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC2.81□□□□□ -1.96
USP42Q9H9J4 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
USP42Q9H9J4 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.81□□□□□ -1.96
USP42Q9H9J4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.81□□□□□ -1.96
USP42Q9H9J4 VIS1.1-201ENST00000610517 203 ntBASIC2.81□□□□□ -1.96
USP42Q9H9J4 AC090116.1-201ENST00000615679 446 ntBASIC2.81□□□□□ -1.96
USP42Q9H9J4 AC092608.3-201ENST00000625017 386 ntBASIC2.81□□□□□ -1.96
USP42Q9H9J4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.81□□□□□ -1.96
USP42Q9H9J4 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
USP42Q9H9J4 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
USP42Q9H9J4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
USP42Q9H9J4 RNA5SP27-201ENST00000363839 119 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 SNORD115-48-201ENST00000364764 76 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 RNU1-51P-201ENST00000365345 176 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 RNU6-444P-201ENST00000383988 108 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 RNU1-138P-201ENST00000384093 164 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 SNORA11.4-201ENST00000408823 129 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 SSXP9-201ENST00000417503 292 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC096632.1-201ENST00000427395 310 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 MTND1P33-201ENST00000446251 917 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 MTCYBP37-201ENST00000510642 1133 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC105914.1-201ENST00000511798 226 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC126177.3-201ENST00000551839 688 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC135628.1-201ENST00000568867 534 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC103710.2-201ENST00000609912 942 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC131902.3-201ENST00000611767 581 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 AL353746.1-201ENST00000566293 6881 ntBASIC2.8□□□□□ -1.96
USP42Q9H9J4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.8□□□□□ -1.96
USP42Q9H9J4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
USP42Q9H9J4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
USP42Q9H9J4 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 RNU6-441P-201ENST00000384545 106 ntBASIC2.79□□□□□ -1.96
USP42Q9H9J4 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 RPS3AP9-201ENST00000417027 792 ntBASIC2.79□□□□□ -1.96
USP42Q9H9J4 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 AC027673.1-201ENST00000456245 405 ntBASIC2.79□□□□□ -1.96
USP42Q9H9J4 RNA5SP310-201ENST00000459084 116 ntBASIC2.79□□□□□ -1.96
USP42Q9H9J4 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 RNU6-295P-201ENST00000516901 104 ntBASIC2.79□□□□□ -1.96
USP42Q9H9J4 RNA5SP402-201ENST00000517148 110 ntBASIC2.79□□□□□ -1.96
USP42Q9H9J4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 AP001804.3-201ENST00000525146 880 ntBASIC2.79□□□□□ -1.96
USP42Q9H9J4 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 AC009220.3-201ENST00000604318 586 ntBASIC2.79□□□□□ -1.96
USP42Q9H9J4 AP003400.6-201ENST00000624698 740 ntBASIC2.79□□□□□ -1.96
USP42Q9H9J4 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.79□□□□□ -1.96
USP42Q9H9J4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.79□□□□□ -1.96
USP42Q9H9J4 SEC63P2-201ENST00000503863 1939 ntBASIC2.79□□□□□ -1.96
USP42Q9H9J4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
USP42Q9H9J4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
USP42Q9H9J4 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
USP42Q9H9J4 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.78□□□□□ -1.96
USP42Q9H9J4 OR5H15-201ENST00000383696 930 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 MIR525-201ENST00000384978 85 ntBASIC2.78□□□□□ -1.96
USP42Q9H9J4 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms