Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP53Q70EK8 RNU6-1287P-201ENST00000362914 107 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 RNU6-946P-201ENST00000383878 107 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 RNU6-1060P-201ENST00000384664 107 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 MIR23A-201ENST00000385245 73 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
USP53Q70EK8 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.67□□□□□ -1.66
USP53Q70EK8 BX510359.2-201ENST00000417920 305 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 AC099677.1-201ENST00000420575 175 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.67□□□□□ -1.66
USP53Q70EK8 AC090774.1-201ENST00000435925 246 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 ARL2BPP10-201ENST00000446487 531 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 AC000111.2-201ENST00000448200 210 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.67□□□□□ -1.66
USP53Q70EK8 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.67□□□□□ -1.66
USP53Q70EK8 RPS5P7-201ENST00000456664 608 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 Y_RNA.654-201ENST00000497848 106 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 CCDC34P1-201ENST00000507441 517 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.67□□□□□ -1.66
USP53Q70EK8 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.67□□□□□ -1.66
USP53Q70EK8 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.67□□□□□ -1.66
USP53Q70EK8 BNIP3P5-201ENST00000562290 498 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 MIR5583-1-201ENST00000580941 59 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.67□□□□□ -1.66
USP53Q70EK8 AF038458.1-201ENST00000588406 262 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 AL590392.1-201ENST00000604960 446 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 AC092807.2-201ENST00000609367 243 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 AC004696.1-201ENST00000614345 607 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 CR381572.2-201ENST00000624852 397 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.67□□□□□ -1.66
USP53Q70EK8 AC100778.3-201ENST00000580060 1750 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 TPTE2P4-201ENST00000258589 1605 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 AC090229.1-201ENST00000590983 1609 ntBASIC4.67□□□□□ -1.66
USP53Q70EK8 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
USP53Q70EK8 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
USP53Q70EK8 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP53Q70EK8 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.67□□□□□ -1.66
USP53Q70EK8 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.67□□□□□ -1.66
USP53Q70EK8 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP53Q70EK8 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP53Q70EK8 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
USP53Q70EK8 AL442639.1-201ENST00000625030 1899 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP53Q70EK8 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.66□□□□□ -1.66
USP53Q70EK8 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.66□□□□□ -1.66
USP53Q70EK8 XIAPP3-201ENST00000312918 795 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
USP53Q70EK8 RNU6-82P-201ENST00000363970 107 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 SNORA23-201ENST00000365128 182 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 Y_RNA.378-201ENST00000365652 113 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP53Q70EK8 Y_RNA.414-201ENST00000384011 101 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 Y_RNA.419-201ENST00000384041 102 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 AC110754.1-201ENST00000399740 601 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 AL583834.1-201ENST00000406943 343 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 MIR1193-201ENST00000408109 78 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 RNU2-43P-201ENST00000410306 190 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 SSXP9-201ENST00000417503 292 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 USP9YP20-201ENST00000419224 558 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 PPP1R11P2-201ENST00000423543 382 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
USP53Q70EK8 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.66□□□□□ -1.66
USP53Q70EK8 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.66□□□□□ -1.66
USP53Q70EK8 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.66□□□□□ -1.66
USP53Q70EK8 KCTD9P3-201ENST00000434597 1169 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.66□□□□□ -1.66
USP53Q70EK8 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.66□□□□□ -1.66
USP53Q70EK8 AC004866.2-201ENST00000438285 481 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 HMGB3P9-201ENST00000441799 583 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 PRPS1P1-201ENST00000445305 876 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 BTF3P6-201ENST00000448054 499 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.66□□□□□ -1.66
USP53Q70EK8 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.66□□□□□ -1.66
USP53Q70EK8 RN7SL517P-201ENST00000462240 305 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.66□□□□□ -1.66
USP53Q70EK8 RNU6-685P-201ENST00000517088 95 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 HMGB1P19-201ENST00000517578 577 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.66□□□□□ -1.66
USP53Q70EK8 AC018630.1-201ENST00000541376 925 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.66□□□□□ -1.66
USP53Q70EK8 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.66□□□□□ -1.66
USP53Q70EK8 MIR4715-201ENST00000584117 79 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 BNIP3P25-201ENST00000596023 559 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 AC078795.3-201ENST00000602913 472 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.66□□□□□ -1.66
USP53Q70EK8 AL133216.2-202ENST00000634512 349 ntBASIC4.66□□□□□ -1.66
USP53Q70EK8 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
USP53Q70EK8 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP53Q70EK8 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
USP53Q70EK8 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP53Q70EK8 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP53Q70EK8 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
USP53Q70EK8 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP53Q70EK8 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.65□□□□□ -1.66
USP53Q70EK8 AP000542.2-201ENST00000623199 6179 ntBASIC4.65□□□□□ -1.66
USP53Q70EK8 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.65□□□□□ -1.66
USP53Q70EK8 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP53Q70EK8 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.65□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms