Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AL354798.1-201ENST00000622505 329 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.21□□□□□ -1.74
COL4A3Q01955 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.21□□□□□ -1.74
COL4A3Q01955 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
COL4A3Q01955 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.21□□□□□ -1.74
COL4A3Q01955 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A3Q01955 MARK2P15-201ENST00000432204 2186 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A3Q01955 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
COL4A3Q01955 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A3Q01955 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
COL4A3Q01955 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.21□□□□□ -1.74
COL4A3Q01955 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
COL4A3Q01955 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.2□□□□□ -1.74
COL4A3Q01955 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL4A3Q01955 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.2□□□□□ -1.74
COL4A3Q01955 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.2□□□□□ -1.74
COL4A3Q01955 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.2□□□□□ -1.74
COL4A3Q01955 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 SRIP2-201ENST00000428470 166 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 RPL23AP30-201ENST00000432419 501 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.2□□□□□ -1.74
COL4A3Q01955 YWHAZP8-201ENST00000436935 731 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 MTND3P16-201ENST00000452205 344 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 FGF7P3-201ENST00000454645 303 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 PPP1R2P5-201ENST00000457256 603 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 AL163973.1-201ENST00000484753 577 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.2□□□□□ -1.74
COL4A3Q01955 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.2□□□□□ -1.74
COL4A3Q01955 AC105417.1-201ENST00000514691 285 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 AP003497.1-201ENST00000528472 562 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 AL353997.4-201ENST00000586196 166 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 AL391813.2-201ENST00000609113 322 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 AC130324.3-201ENST00000614165 542 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
COL4A3Q01955 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 RIOK3P1-201ENST00000418778 1528 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.2□□□□□ -1.74
COL4A3Q01955 OR4G1P-203ENST00000641984 1631 ntBASIC4.2□□□□□ -1.74
COL4A3Q01955 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.2□□□□□ -1.74
COL4A3Q01955 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.2□□□□□ -1.74
COL4A3Q01955 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A3Q01955 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
COL4A3Q01955 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 RNA5SP399-201ENST00000364003 117 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 SNORA63C-201ENST00000364578 129 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 Y_RNA.259-201ENST00000364619 101 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 RNU6-343P-201ENST00000364709 104 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 RNU6-996P-201ENST00000365438 107 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 RNU6-921P-201ENST00000384361 107 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 SNORD66.1-201ENST00000391230 76 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 AC016769.3-201ENST00000396562 315 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.19□□□□□ -1.74
COL4A3Q01955 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.19□□□□□ -1.74
COL4A3Q01955 GPM6BP2-201ENST00000432046 144 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 DDX3P2-201ENST00000446138 111 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 GPM6BP1-201ENST00000446387 144 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.19□□□□□ -1.74
COL4A3Q01955 CACYBPP2-201ENST00000453625 678 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.19□□□□□ -1.74
COL4A3Q01955 AC005229.2-201ENST00000456995 399 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 MTCO2P29-201ENST00000465212 189 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC4.19□□□□□ -1.74
COL4A3Q01955 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.19□□□□□ -1.74
COL4A3Q01955 IGLV3-26-201ENST00000520756 302 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 IGKV2D-19-201ENST00000523346 262 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 AP000907.2-201ENST00000530827 353 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.19□□□□□ -1.74
COL4A3Q01955 RPL21P7-201ENST00000557463 483 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 MIR4742-201ENST00000581069 85 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
COL4A3Q01955 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.19□□□□□ -1.74
COL4A3Q01955 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.19□□□□□ -1.74
COL4A3Q01955 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A3Q01955 Y_RNA.202-201ENST00000364083 110 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 RNU6-1160P-201ENST00000384546 104 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 Y_RNA.579-201ENST00000390939 94 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 PTMAP5-201ENST00000393073 333 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 AL023807.1-201ENST00000407932 359 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 MIR548P-201ENST00000408336 84 ntBASIC4.19□□□□□ -1.74
COL4A3Q01955 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.19□□□□□ -1.74
COL4A3Q01955 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms