Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA4Q00056 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA4Q00056 BNIP3P6-201ENST00000549284 499 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC011611.1-201ENST00000552179 197 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXA4Q00056 SCOCP1-201ENST00000554676 349 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA4Q00056 AC024619.4-201ENST00000580924 316 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA4Q00056 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA4Q00056 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA4Q00056 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA4Q00056 AL354984.3-201ENST00000604803 325 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC010201.1-201ENST00000605051 540 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC021646.1-201ENST00000605469 484 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AL050343.2-201ENST00000607338 280 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC130324.3-201ENST00000614165 542 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC093913.1-201ENST00000614178 329 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 RMST_7.1-201ENST00000621935 268 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC090574.1-201ENST00000623186 233 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC011155.2-201ENST00000623202 216 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 TPTEP1-208ENST00000636884 213 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA4Q00056 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
HOXA4Q00056 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA4Q00056 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC3.75□□□□□ -1.81
HOXA4Q00056 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
HOXA4Q00056 CROT-204ENST00000442291 1993 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA4Q00056 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA4Q00056 ASNSP1-201ENST00000518311 1939 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA4Q00056 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.74□□□□□ -1.81
HOXA4Q00056 RNU4-66P-201ENST00000365199 138 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 Y_RNA.373-201ENST00000365600 103 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 SNORA24.1-201ENST00000384401 135 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 MIR514A2-201ENST00000385131 88 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 MIR514A3-201ENST00000385132 88 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 UBE2V1P2-201ENST00000397758 440 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 AL356057.2-201ENST00000403318 432 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 BX323014.1-201ENST00000412876 237 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 AC009161.1-201ENST00000417306 376 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 MRPS18BP2-201ENST00000434310 759 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 AL590399.6-201ENST00000446396 307 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 AC009220.1-201ENST00000451614 275 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA4Q00056 DHFRP3-201ENST00000455595 559 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 RPL36AP13-201ENST00000457490 317 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 AC007537.2-201ENST00000472093 511 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA4Q00056 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA4Q00056 RNU6-277P-201ENST00000516272 106 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA4Q00056 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA4Q00056 AC087241.2-201ENST00000535801 324 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.74□□□□□ -1.81
HOXA4Q00056 AL355375.2-201ENST00000574825 175 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
HOXA4Q00056 MIR6758-201ENST00000620653 63 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA4Q00056 FRG1KP-201ENST00000623592 341 ntBASIC3.74□□□□□ -1.81
HOXA4Q00056 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA4Q00056 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA4Q00056 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA4Q00056 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA4Q00056 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA4Q00056 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA4Q00056 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
HOXA4Q00056 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.74□□□□□ -1.81
HOXA4Q00056 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA4Q00056 TAB3P1-202ENST00000452645 1634 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA4Q00056 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA4Q00056 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
HOXA4Q00056 BDP1P-201ENST00000582658 1990 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AL139276.1-201ENST00000311910 1001 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AC073343.1-201ENST00000328239 651 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 FRG1CP-201ENST00000358464 769 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 MIR331-201ENST00000362302 94 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 Y_RNA.67-201ENST00000362870 100 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 Y_RNA.184-201ENST00000363884 108 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA4Q00056 Y_RNA.419-201ENST00000384041 102 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 RNU6-831P-201ENST00000384548 107 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 MIR135A2-201ENST00000384854 100 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
HOXA4Q00056 AL109755.1-201ENST00000401791 649 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA4Q00056 AC068533.1-201ENST00000418542 415 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA4Q00056 AC068287.1-201ENST00000430283 295 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA4Q00056 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.73□□□□□ -1.81
HOXA4Q00056 RPL21P133-201ENST00000443666 476 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms