Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL356320.1-201ENST00000429616 163 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A4P53420 AC244505.4-201ENST00000434905 287 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A4P53420 SSXP5-201ENST00000443473 287 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A4P53420 AC092754.2-201ENST00000463506 460 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AP000893.1-201ENST00000474462 794 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A4P53420 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.79□□□□□ -1.96
COL4A4P53420 MTND3P5-201ENST00000512798 333 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 RNU6-1178P-201ENST00000516674 107 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL133271.1-201ENST00000538229 291 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL845331.3-202ENST00000562856 261 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.79□□□□□ -1.96
COL4A4P53420 ZNF861P-201ENST00000588126 639 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A4P53420 DPRXP5-201ENST00000604662 539 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AC099785.1-201ENST00000605697 437 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL031775.1-201ENST00000607014 887 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
COL4A4P53420 AL160394.1-201ENST00000624765 724 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AC091564.4-201ENST00000533934 2194 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL390237.1-201ENST00000404226 1415 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 PROS2P-201ENST00000474651 1951 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A4P53420 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.79□□□□□ -1.96
COL4A4P53420 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC2.79□□□□□ -1.96
COL4A4P53420 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A4P53420 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A4P53420 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A4P53420 AL445437.1-201ENST00000623157 3087 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A4P53420 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
COL4A4P53420 Z86062.1-201ENST00000406773 777 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.79□□□□□ -1.96
COL4A4P53420 RNU4-72P-201ENST00000410754 173 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AC004987.3-201ENST00000413879 771 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL135786.1-201ENST00000415892 214 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 MTND1P23-201ENST00000416931 372 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL449283.1-202ENST00000418249 604 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 MTCYBP5-201ENST00000423752 1135 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 DEFB130D-201ENST00000426866 237 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.79□□□□□ -1.96
COL4A4P53420 TAF9P1-201ENST00000445421 515 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL589880.1-201ENST00000448271 287 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A4P53420 TAF9P2-201ENST00000454958 515 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AL359385.1-201ENST00000456509 365 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 RPL21P47-201ENST00000483696 477 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 RPL9P33-201ENST00000484311 566 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 OR9N1P-202ENST00000494289 481 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 RPL21P131-201ENST00000497298 483 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AC091951.3-201ENST00000504093 246 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC2.79□□□□□ -1.96
COL4A4P53420 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC2.79□□□□□ -1.96
COL4A4P53420 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC2.79□□□□□ -1.96
COL4A4P53420 AC078795.2-201ENST00000602835 1252 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A4P53420 AC067852.7-201ENST00000623270 535 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 MIR1322-201ENST00000638013 71 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 AC092104.1-201ENST00000497346 1441 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL4A4P53420 AC092881.1-201ENST00000638218 2733 ntBASIC2.79□□□□□ -1.96
COL4A4P53420 MTND5P27-201ENST00000428871 1720 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A4P53420 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC2.78□□□□□ -1.96
COL4A4P53420 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL4A4P53420 RNU6-481P-201ENST00000384194 107 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 Z98742.3-201ENST00000418637 326 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC2.78□□□□□ -1.96
COL4A4P53420 AC011233.1-201ENST00000422812 283 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC2.78□□□□□ -1.96
COL4A4P53420 RPL7P55-201ENST00000450522 746 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 RPS27AP8-201ENST00000452665 445 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC2.78□□□□□ -1.96
COL4A4P53420 RPS3AP22-201ENST00000488297 769 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 CKS1BP2-201ENST00000497342 240 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 AC104685.1-201ENST00000502445 371 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 OR5H5P-201ENST00000503164 928 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 AC021087.2-201ENST00000504656 1203 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 AC021146.8-201ENST00000507455 733 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 AC006445.2-201ENST00000510061 472 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.78□□□□□ -1.96
COL4A4P53420 RN7SKP34-201ENST00000516142 244 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 HPRT1P3-201ENST00000539521 576 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.78□□□□□ -1.96
COL4A4P53420 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.78□□□□□ -1.96
COL4A4P53420 AP000403.1-201ENST00000603349 851 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 AL035411.2-201ENST00000604022 421 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 RN7SKP299-201ENST00000606679 301 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 AC013468.1-201ENST00000608680 598 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
COL4A4P53420 AL008636.1-201ENST00000625038 1018 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 LRRC77P-213ENST00000637727 880 ntBASIC2.78□□□□□ -1.96
COL4A4P53420 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.78□□□□□ -1.96
COL4A4P53420 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.78□□□□□ -1.96
COL4A4P53420 SLC10A5P1-201ENST00000379063 1306 ntBASIC2.78□□□□□ -1.97
COL4A4P53420 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms