Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 AC069304.2-201ENST00000605154 435 ntBASIC3.3□□□□□ -1.88
RNF41Q9H4P4 MIR7106-201ENST00000612419 65 ntBASIC3.3□□□□□ -1.88
RNF41Q9H4P4 AC120349.2-201ENST00000625002 298 ntBASIC3.3□□□□□ -1.88
RNF41Q9H4P4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.3□□□□□ -1.88
RNF41Q9H4P4 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AC021755.1-201ENST00000559747 1447 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AC108206.1-201ENST00000570186 4159 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 SNORA80A-201ENST00000363922 136 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 SNORA51.4-201ENST00000364993 124 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 MIR513B-201ENST00000385136 84 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AL023807.1-201ENST00000407932 359 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 RNU2-37P-201ENST00000410695 177 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 ELOCP9-201ENST00000418624 239 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 OR2B8P-201ENST00000432841 938 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AC009969.1-201ENST00000438726 172 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 MTCO1P48-201ENST00000448024 1096 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 NPM1P49-201ENST00000448027 714 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 OR5H5P-201ENST00000503164 928 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AP004242.1-201ENST00000533701 349 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AC125611.1-201ENST00000549563 229 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 AL391001.1-201ENST00000602747 715 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 MIR4278-201ENST00000636094 69 ntBASIC3.29□□□□□ -1.88
RNF41Q9H4P4 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
RNF41Q9H4P4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC107982.1-201ENST00000507171 1300 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 NACA3P-201ENST00000359690 648 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 Y_RNA.192-201ENST00000363977 102 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 RNU6-636P-201ENST00000384598 107 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 MIR181A2-201ENST00000384863 110 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC016769.3-201ENST00000396562 315 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 MTND4LP20-201ENST00000402379 270 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 MTCYBP24-201ENST00000420387 1106 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 USP9YP11-201ENST00000427537 717 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 RPS29P6-201ENST00000438196 145 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 USP9YP25-201ENST00000457708 443 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC003982.1-202ENST00000469928 248 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC078918.1-201ENST00000498515 228 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC005921.1-201ENST00000510589 286 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 SNORA9.3-201ENST00000516383 129 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 HIGD1AP17-201ENST00000554576 276 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC010928.3-201ENST00000587712 541 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AL009028.1-201ENST00000604895 802 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC008277.2-201ENST00000605196 797 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC034229.4-201ENST00000607861 441 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC092106.3-201ENST00000611308 722 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC090116.1-201ENST00000615679 446 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AC090897.3-201ENST00000636973 1157 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.28□□□□□ -1.88
RNF41Q9H4P4 AP003122.5-201ENST00000527668 3766 ntBASIC3.28□□□□□ -1.88
RNF41Q9H4P4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.89
RNF41Q9H4P4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.27□□□□□ -1.89
RNF41Q9H4P4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
RNF41Q9H4P4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.27□□□□□ -1.89
RNF41Q9H4P4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
RNF41Q9H4P4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
RNF41Q9H4P4 OR5J1P-201ENST00000313544 939 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
RNF41Q9H4P4 SNRPEP3-201ENST00000338402 276 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 Y_RNA.25-201ENST00000362528 102 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 RNU6-374P-201ENST00000364146 108 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 AL138827.1-201ENST00000402666 306 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 AL590084.1-201ENST00000407885 387 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 RNA5SP56-201ENST00000410277 118 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 RNU2-28P-201ENST00000410457 189 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 RNA5SP21-201ENST00000410917 96 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 FNDC3CP-201ENST00000420795 1155 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.27□□□□□ -1.89
RNF41Q9H4P4 MTCO2P20-201ENST00000437339 673 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms