Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.37□□□□□ -1.55
MSX1P28360 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
MSX1P28360 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX1P28360 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX1P28360 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
MSX1P28360 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
MSX1P28360 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
MSX1P28360 AC087516.1-201ENST00000561236 2428 ntBASIC5.36□□□□□ -1.55
MSX1P28360 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.36□□□□□ -1.55
MSX1P28360 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 SMG1P7-201ENST00000565246 2704 ntBASIC5.36□□□□□ -1.55
MSX1P28360 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 U8.8-201ENST00000365399 135 ntBASIC5.36□□□□□ -1.55
MSX1P28360 Y_RNA.458-201ENST00000384240 102 ntBASIC5.36□□□□□ -1.55
MSX1P28360 SNORD115-46-201ENST00000390982 71 ntBASIC5.36□□□□□ -1.55
MSX1P28360 RNU6-700P-201ENST00000391043 107 ntBASIC5.36□□□□□ -1.55
MSX1P28360 BX842559.1-201ENST00000419615 532 ntBASIC5.36□□□□□ -1.55
MSX1P28360 AL354766.1-201ENST00000423396 542 ntBASIC5.36□□□□□ -1.55
MSX1P28360 AL445305.1-201ENST00000432577 575 ntBASIC5.36□□□□□ -1.55
MSX1P28360 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX1P28360 AP000281.1-201ENST00000444036 316 ntBASIC5.36□□□□□ -1.55
MSX1P28360 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX1P28360 AL133445.1-201ENST00000467051 452 ntBASIC5.36□□□□□ -1.55
MSX1P28360 RPL7P49-201ENST00000471402 708 ntBASIC5.36□□□□□ -1.55
MSX1P28360 RN7SL57P-201ENST00000493687 290 ntBASIC5.36□□□□□ -1.55
MSX1P28360 TOMM22P4-201ENST00000511318 336 ntBASIC5.36□□□□□ -1.55
MSX1P28360 AC067942.3-201ENST00000512025 362 ntBASIC5.36□□□□□ -1.55
MSX1P28360 AC007016.1-201ENST00000512110 244 ntBASIC5.36□□□□□ -1.55
MSX1P28360 RNU6-1338P-201ENST00000516328 91 ntBASIC5.36□□□□□ -1.55
MSX1P28360 MIR2117-201ENST00000516780 80 ntBASIC5.36□□□□□ -1.55
MSX1P28360 IGKV2D-36-201ENST00000518643 226 ntBASIC5.36□□□□□ -1.55
MSX1P28360 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC5.36□□□□□ -1.55
MSX1P28360 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.36□□□□□ -1.55
MSX1P28360 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC5.36□□□□□ -1.55
MSX1P28360 HNRNPCP4-201ENST00000571636 900 ntBASIC5.36□□□□□ -1.55
MSX1P28360 RN7SL652P-201ENST00000577769 300 ntBASIC5.36□□□□□ -1.55
MSX1P28360 MIR4260-201ENST00000583107 67 ntBASIC5.36□□□□□ -1.55
MSX1P28360 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.36□□□□□ -1.55
MSX1P28360 SNORD39.4-201ENST00000620099 78 ntBASIC5.36□□□□□ -1.55
MSX1P28360 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.36□□□□□ -1.55
MSX1P28360 BTBD10P1-201ENST00000549824 1352 ntBASIC5.36□□□□□ -1.55
MSX1P28360 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.36□□□□□ -1.55
MSX1P28360 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
MSX1P28360 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.36□□□□□ -1.55
MSX1P28360 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.36□□□□□ -1.55
MSX1P28360 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.36□□□□□ -1.55
MSX1P28360 AC005224.3-201ENST00000584683 2140 ntBASIC5.36□□□□□ -1.55
MSX1P28360 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
MSX1P28360 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.36□□□□□ -1.55
MSX1P28360 AC022164.1-201ENST00000568767 2673 ntBASIC5.36□□□□□ -1.55
MSX1P28360 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSX1P28360 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX1P28360 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.35□□□□□ -1.55
MSX1P28360 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX1P28360 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.35□□□□□ -1.55
MSX1P28360 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
MSX1P28360 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC5.35□□□□□ -1.55
MSX1P28360 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX1P28360 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX1P28360 Y_RNA.27-201ENST00000362540 103 ntBASIC5.35□□□□□ -1.55
MSX1P28360 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX1P28360 U3.35-201ENST00000408405 208 ntBASIC5.35□□□□□ -1.55
MSX1P28360 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.35□□□□□ -1.55
MSX1P28360 BX323845.3-201ENST00000428215 527 ntBASIC5.35□□□□□ -1.55
MSX1P28360 AL360271.2-201ENST00000447710 161 ntBASIC5.35□□□□□ -1.55
MSX1P28360 AL513124.1-201ENST00000450410 614 ntBASIC5.35□□□□□ -1.55
MSX1P28360 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX1P28360 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX1P28360 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.35□□□□□ -1.55
MSX1P28360 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.35□□□□□ -1.55
MSX1P28360 RNA5SP362-201ENST00000516048 118 ntBASIC5.35□□□□□ -1.55
MSX1P28360 Y_RNA.683-201ENST00000516508 93 ntBASIC5.35□□□□□ -1.55
MSX1P28360 LRRC37A5P-203ENST00000580181 585 ntBASIC5.35□□□□□ -1.55
MSX1P28360 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.35□□□□□ -1.55
MSX1P28360 OR7E18P-201ENST00000592589 702 ntBASIC5.35□□□□□ -1.55
MSX1P28360 RNF138P2-201ENST00000603490 592 ntBASIC5.35□□□□□ -1.55
MSX1P28360 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX1P28360 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX1P28360 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX1P28360 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSX1P28360 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.34□□□□□ -1.55
MSX1P28360 RLIMP1-201ENST00000339626 1680 ntBASIC5.34□□□□□ -1.55
MSX1P28360 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.34□□□□□ -1.55
MSX1P28360 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSX1P28360 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSX1P28360 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms