Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 SLC25A1P2-201ENST00000430693 912 ntBASIC20.04■□□□□ 0.8
USP3Q9Y6I4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 AL023803.3-201ENST00000615559 522 ntBASIC20.04■□□□□ 0.8
USP3Q9Y6I4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.04■□□□□ 0.8
USP3Q9Y6I4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.03■□□□□ 0.8
USP3Q9Y6I4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP3Q9Y6I4 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP3Q9Y6I4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP3Q9Y6I4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
USP3Q9Y6I4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.02■□□□□ 0.79
USP3Q9Y6I4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
USP3Q9Y6I4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP3Q9Y6I4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.02■□□□□ 0.79
USP3Q9Y6I4 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 INGX-201ENST00000359239 846 ntBASIC20.01■□□□□ 0.79
USP3Q9Y6I4 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.01■□□□□ 0.79
USP3Q9Y6I4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 AC092338.2-201ENST00000568827 1415 ntBASIC20.01■□□□□ 0.79
USP3Q9Y6I4 KRT18P22-201ENST00000402024 1347 ntBASIC20.01■□□□□ 0.79
USP3Q9Y6I4 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP3Q9Y6I4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20■□□□□ 0.79
USP3Q9Y6I4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP3Q9Y6I4 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20■□□□□ 0.79
USP3Q9Y6I4 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
USP3Q9Y6I4 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20■□□□□ 0.79
USP3Q9Y6I4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP3Q9Y6I4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
USP3Q9Y6I4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
USP3Q9Y6I4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20■□□□□ 0.79
USP3Q9Y6I4 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
USP3Q9Y6I4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20■□□□□ 0.79
USP3Q9Y6I4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20■□□□□ 0.79
USP3Q9Y6I4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
USP3Q9Y6I4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP3Q9Y6I4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP3Q9Y6I4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20■□□□□ 0.79
USP3Q9Y6I4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20■□□□□ 0.79
USP3Q9Y6I4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms