Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SSX2IPQ9Y2D8 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.58■□□□□ 0.89
SSX2IPQ9Y2D8 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SSX2IPQ9Y2D8 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.58■□□□□ 0.89
SSX2IPQ9Y2D8 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.58■□□□□ 0.89
SSX2IPQ9Y2D8 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.58■□□□□ 0.89
SSX2IPQ9Y2D8 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.58■□□□□ 0.89
SSX2IPQ9Y2D8 AC091076.1-201ENST00000610741 619 ntBASIC20.58■□□□□ 0.89
SSX2IPQ9Y2D8 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SSX2IPQ9Y2D8 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SSX2IPQ9Y2D8 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
SSX2IPQ9Y2D8 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.58■□□□□ 0.88
SSX2IPQ9Y2D8 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.58■□□□□ 0.88
SSX2IPQ9Y2D8 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 TSPY5P-201ENST00000426936 936 ntBASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 AC139887.4-201ENST00000607877 719 ntBASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 AC141257.4-201ENST00000634557 245 ntBASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 AC136944.6-201ENST00000634818 245 ntBASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SSX2IPQ9Y2D8 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 AC092647.4-201ENST00000457211 535 ntBASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 YBX1P2-201ENST00000489612 999 ntBASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SSX2IPQ9Y2D8 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 AC020907.5-201ENST00000624372 1936 ntBASIC20.55■□□□□ 0.88
SSX2IPQ9Y2D8 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 CKBP1-201ENST00000565489 1086 ntBASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
SSX2IPQ9Y2D8 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SSX2IPQ9Y2D8 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SSX2IPQ9Y2D8 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.53■□□□□ 0.88
SSX2IPQ9Y2D8 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
SSX2IPQ9Y2D8 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SSX2IPQ9Y2D8 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms