Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
MKS1Q9NXB0 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
MKS1Q9NXB0 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.92■□□□□ 0.62
MKS1Q9NXB0 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MKS1Q9NXB0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MKS1Q9NXB0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 AC005332.8-201ENST00000622750 2735 ntBASIC18.91■□□□□ 0.62
MKS1Q9NXB0 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.91■□□□□ 0.62
MKS1Q9NXB0 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 AC068880.1-201ENST00000507289 2297 ntBASIC18.9■□□□□ 0.62
MKS1Q9NXB0 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 DUSP5P2-201ENST00000426873 1033 ntBASIC18.9■□□□□ 0.62
MKS1Q9NXB0 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 AL133373.2-201ENST00000623187 2828 ntBASIC18.9■□□□□ 0.62
MKS1Q9NXB0 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.9■□□□□ 0.62
MKS1Q9NXB0 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MKS1Q9NXB0 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
MKS1Q9NXB0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.89■□□□□ 0.62
MKS1Q9NXB0 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
MKS1Q9NXB0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
MKS1Q9NXB0 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
MKS1Q9NXB0 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.89■□□□□ 0.62
MKS1Q9NXB0 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 AC026271.2-201ENST00000428091 497 ntBASIC18.89■□□□□ 0.61
MKS1Q9NXB0 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MKS1Q9NXB0 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms