Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 TSPY20P-201ENST00000450910 630 ntBASIC19.11■□□□□ 0.65
TREX1Q9NSU2 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.1■□□□□ 0.65
TREX1Q9NSU2 FAM201B-201ENST00000458407 597 ntBASIC19.1■□□□□ 0.65
TREX1Q9NSU2 RPS2P4-201ENST00000476944 856 ntBASIC19.1■□□□□ 0.65
TREX1Q9NSU2 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 AL359736.2-201ENST00000621992 437 ntBASIC19.1■□□□□ 0.65
TREX1Q9NSU2 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 AL031598.1-201ENST00000561511 1773 ntBASIC19.1■□□□□ 0.65
TREX1Q9NSU2 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.1■□□□□ 0.65
TREX1Q9NSU2 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 KSR1P1-201ENST00000446298 240 ntBASIC19.09■□□□□ 0.65
TREX1Q9NSU2 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 AP002982.1-201ENST00000492365 877 ntBASIC19.09■□□□□ 0.65
TREX1Q9NSU2 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 AC131212.4-201ENST00000623606 975 ntBASIC19.09■□□□□ 0.65
TREX1Q9NSU2 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TREX1Q9NSU2 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TREX1Q9NSU2 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
TREX1Q9NSU2 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
TREX1Q9NSU2 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TREX1Q9NSU2 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TREX1Q9NSU2 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TREX1Q9NSU2 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 AL353807.1-201ENST00000427475 662 ntBASIC19.08■□□□□ 0.64
TREX1Q9NSU2 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 RARRES2P10-201ENST00000564312 460 ntBASIC19.08■□□□□ 0.64
TREX1Q9NSU2 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.08■□□□□ 0.64
TREX1Q9NSU2 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TREX1Q9NSU2 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms