Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP44Q9H0E7 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 C2orf69P3-201ENST00000565542 1120 ntBASIC23.94■■□□□ 1.42
USP44Q9H0E7 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USP44Q9H0E7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP44Q9H0E7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
USP44Q9H0E7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC23.94■■□□□ 1.42
USP44Q9H0E7 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
USP44Q9H0E7 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USP44Q9H0E7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USP44Q9H0E7 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP44Q9H0E7 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP44Q9H0E7 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC23.93■■□□□ 1.42
USP44Q9H0E7 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
USP44Q9H0E7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC23.93■■□□□ 1.42
USP44Q9H0E7 CA15P1-201ENST00000481698 905 ntBASIC23.93■■□□□ 1.42
USP44Q9H0E7 DUT-205ENST00000558813 769 ntTSL 2 BASIC23.93■■□□□ 1.42
USP44Q9H0E7 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC23.93■■□□□ 1.42
USP44Q9H0E7 LINC01023-201ENST00000606054 436 ntBASIC23.93■■□□□ 1.42
USP44Q9H0E7 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
USP44Q9H0E7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
USP44Q9H0E7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP44Q9H0E7 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
USP44Q9H0E7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC23.93■■□□□ 1.42
USP44Q9H0E7 FEM1AP3-201ENST00000403722 1741 ntBASIC23.93■■□□□ 1.42
USP44Q9H0E7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC23.93■■□□□ 1.42
USP44Q9H0E7 AC092338.2-201ENST00000568827 1415 ntBASIC23.93■■□□□ 1.42
USP44Q9H0E7 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC23.93■■□□□ 1.42
USP44Q9H0E7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP44Q9H0E7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
USP44Q9H0E7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
USP44Q9H0E7 HIST1H2APS4-201ENST00000362070 348 ntBASIC23.92■■□□□ 1.42
USP44Q9H0E7 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP44Q9H0E7 SLC25A1P2-201ENST00000430693 912 ntBASIC23.92■■□□□ 1.42
USP44Q9H0E7 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC23.92■■□□□ 1.42
USP44Q9H0E7 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC23.92■■□□□ 1.42
USP44Q9H0E7 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP44Q9H0E7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP44Q9H0E7 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP44Q9H0E7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP44Q9H0E7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
USP44Q9H0E7 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP44Q9H0E7 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
USP44Q9H0E7 TBC1D3P2-202ENST00000577902 1649 ntBASIC23.92■■□□□ 1.42
USP44Q9H0E7 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP44Q9H0E7 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP44Q9H0E7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP44Q9H0E7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
USP44Q9H0E7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 UBQLN4P1-201ENST00000461599 1801 ntBASIC23.91■■□□□ 1.42
USP44Q9H0E7 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP44Q9H0E7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
USP44Q9H0E7 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
USP44Q9H0E7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP44Q9H0E7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC23.9■■□□□ 1.42
USP44Q9H0E7 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP44Q9H0E7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
USP44Q9H0E7 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP44Q9H0E7 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP44Q9H0E7 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP44Q9H0E7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP44Q9H0E7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
USP44Q9H0E7 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP44Q9H0E7 AC007663.1-201ENST00000438948 1240 ntBASIC23.9■■□□□ 1.42
USP44Q9H0E7 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC23.9■■□□□ 1.42
USP44Q9H0E7 ECEL1P2-202ENST00000465689 757 ntBASIC23.9■■□□□ 1.42
USP44Q9H0E7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC23.9■■□□□ 1.42
USP44Q9H0E7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC23.9■■□□□ 1.42
USP44Q9H0E7 FAM87A-204ENST00000613235 858 ntBASIC23.9■■□□□ 1.42
USP44Q9H0E7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC23.9■■□□□ 1.42
USP44Q9H0E7 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP44Q9H0E7 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP44Q9H0E7 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
USP44Q9H0E7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC23.89■■□□□ 1.42
USP44Q9H0E7 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP44Q9H0E7 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP44Q9H0E7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
USP44Q9H0E7 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC23.89■■□□□ 1.42
USP44Q9H0E7 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP44Q9H0E7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP44Q9H0E7 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms