Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 BX276092.5-203ENST00000456199 560 ntBASIC24.85■■□□□ 1.57
SHANK3Q9BYB0 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC24.85■■□□□ 1.57
SHANK3Q9BYB0 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
SHANK3Q9BYB0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
SHANK3Q9BYB0 AC007375.3-201ENST00000600936 2314 ntBASIC24.85■■□□□ 1.57
SHANK3Q9BYB0 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
SHANK3Q9BYB0 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
SHANK3Q9BYB0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SHANK3Q9BYB0 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 PALM-208ENST00000592155 2272 ntTSL 4 BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
SHANK3Q9BYB0 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 TSSC2-201ENST00000450217 709 ntBASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 AC012615.1-201ENST00000565797 1299 ntBASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 AP002414.4-201ENST00000589764 1148 ntBASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 AC024243.1-201ENST00000609234 778 ntBASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SHANK3Q9BYB0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
SHANK3Q9BYB0 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
SHANK3Q9BYB0 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SHANK3Q9BYB0 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
SHANK3Q9BYB0 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC24.82■■□□□ 1.56
SHANK3Q9BYB0 CIB2-208ENST00000560618 804 ntTSL 2 BASIC24.82■■□□□ 1.56
SHANK3Q9BYB0 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC24.82■■□□□ 1.56
SHANK3Q9BYB0 AL391422.3-201ENST00000603791 2761 ntBASIC24.82■■□□□ 1.56
SHANK3Q9BYB0 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
SHANK3Q9BYB0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC24.82■■□□□ 1.56
SHANK3Q9BYB0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 AC004870.1-201ENST00000315132 882 ntBASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 CALM1-205ENST00000553542 877 ntTSL 5 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 RNF126P1-202ENST00000569893 925 ntBASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 TEN1-204ENST00000588202 862 ntTSL 3 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 EMBP1-201ENST00000458200 901 ntBASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 MPI-205ENST00000562606 1052 ntTSL 3 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
SHANK3Q9BYB0 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 AL023284.2-201ENST00000405850 579 ntBASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 KRT8P26-201ENST00000534154 1276 ntBASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 SLC25A6P4-201ENST00000586535 553 ntBASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 AL136038.4-201ENST00000603606 1261 ntBASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SHANK3Q9BYB0 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 KRT18P1-202ENST00000452408 1331 ntBASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
SHANK3Q9BYB0 AL391807.1-203ENST00000604392 2365 ntBASIC24.78■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms