Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.06■□□□□ 0.32
USB1Q9BQ65 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.06■□□□□ 0.32
USB1Q9BQ65 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.06■□□□□ 0.32
USB1Q9BQ65 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.06■□□□□ 0.32
USB1Q9BQ65 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
USB1Q9BQ65 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
USB1Q9BQ65 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
USB1Q9BQ65 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 REXO1L10P-201ENST00000615707 1290 ntBASIC17.05■□□□□ 0.32
USB1Q9BQ65 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USB1Q9BQ65 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
USB1Q9BQ65 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 AC112907.3-201ENST00000577781 2400 ntBASIC17.04■□□□□ 0.32
USB1Q9BQ65 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 AL162377.1-201ENST00000618844 1793 ntBASIC17.04■□□□□ 0.32
USB1Q9BQ65 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USB1Q9BQ65 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USB1Q9BQ65 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.03■□□□□ 0.32
USB1Q9BQ65 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.03■□□□□ 0.32
USB1Q9BQ65 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
USB1Q9BQ65 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.03■□□□□ 0.32
USB1Q9BQ65 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.03■□□□□ 0.32
USB1Q9BQ65 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
USB1Q9BQ65 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
USB1Q9BQ65 AC211429.1-201ENST00000415277 523 ntBASIC17.03■□□□□ 0.32
USB1Q9BQ65 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.03■□□□□ 0.32
USB1Q9BQ65 RBM17P1-201ENST00000453646 1190 ntBASIC17.03■□□□□ 0.32
USB1Q9BQ65 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.03■□□□□ 0.32
USB1Q9BQ65 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.03■□□□□ 0.32
USB1Q9BQ65 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USB1Q9BQ65 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms