Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 RNPS1P1-201ENST00000507437 918 ntBASIC18.96■□□□□ 0.63
VPS13AQ96RL7 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.96■□□□□ 0.63
VPS13AQ96RL7 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 KRT8P11-201ENST00000409686 1436 ntBASIC18.96■□□□□ 0.63
VPS13AQ96RL7 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS13AQ96RL7 Z83836.1-201ENST00000624605 1642 ntBASIC18.96■□□□□ 0.62
VPS13AQ96RL7 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.95■□□□□ 0.62
VPS13AQ96RL7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 AP001160.2-201ENST00000596071 487 ntBASIC18.95■□□□□ 0.62
VPS13AQ96RL7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VPS13AQ96RL7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 AKR1C7P-201ENST00000305623 895 ntBASIC18.94■□□□□ 0.62
VPS13AQ96RL7 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 SEC1P-202ENST00000473944 940 ntBASIC18.94■□□□□ 0.62
VPS13AQ96RL7 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS13AQ96RL7 KRT16P6-202ENST00000425692 1426 ntBASIC18.94■□□□□ 0.62
VPS13AQ96RL7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
VPS13AQ96RL7 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms