Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS35Q96QK1 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
VPS35Q96QK1 AC093484.2-201ENST00000580996 2166 ntBASIC19.02■□□□□ 0.63
VPS35Q96QK1 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS35Q96QK1 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS35Q96QK1 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
VPS35Q96QK1 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.02■□□□□ 0.63
VPS35Q96QK1 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS35Q96QK1 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
VPS35Q96QK1 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS35Q96QK1 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS35Q96QK1 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS35Q96QK1 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS35Q96QK1 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS35Q96QK1 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
VPS35Q96QK1 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS35Q96QK1 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS35Q96QK1 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS35Q96QK1 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS35Q96QK1 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS35Q96QK1 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS35Q96QK1 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS35Q96QK1 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS35Q96QK1 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.01■□□□□ 0.63
VPS35Q96QK1 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
VPS35Q96QK1 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VPS35Q96QK1 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS35Q96QK1 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS35Q96QK1 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
VPS35Q96QK1 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19■□□□□ 0.63
VPS35Q96QK1 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS35Q96QK1 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS35Q96QK1 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19■□□□□ 0.63
VPS35Q96QK1 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19■□□□□ 0.63
VPS35Q96QK1 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
VPS35Q96QK1 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS35Q96QK1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS35Q96QK1 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS35Q96QK1 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19■□□□□ 0.63
VPS35Q96QK1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19■□□□□ 0.63
VPS35Q96QK1 GRAMD4P8-201ENST00000605465 1115 ntBASIC19■□□□□ 0.63
VPS35Q96QK1 AC096733.2-201ENST00000609937 1394 ntBASIC19■□□□□ 0.63
VPS35Q96QK1 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19■□□□□ 0.63
VPS35Q96QK1 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19■□□□□ 0.63
VPS35Q96QK1 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS35Q96QK1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VPS35Q96QK1 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS35Q96QK1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19■□□□□ 0.63
VPS35Q96QK1 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 AC079598.2-202ENST00000546624 1451 ntBASIC18.99■□□□□ 0.63
VPS35Q96QK1 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 PRSS44-201ENST00000515154 1146 ntBASIC18.99■□□□□ 0.63
VPS35Q96QK1 AP005242.2-201ENST00000580065 1175 ntBASIC18.99■□□□□ 0.63
VPS35Q96QK1 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS35Q96QK1 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS35Q96QK1 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS35Q96QK1 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS35Q96QK1 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS35Q96QK1 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.98■□□□□ 0.63
VPS35Q96QK1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS35Q96QK1 TSPY15P-201ENST00000457163 923 ntBASIC18.98■□□□□ 0.63
VPS35Q96QK1 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
VPS35Q96QK1 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
VPS35Q96QK1 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 KRT8P11-201ENST00000409686 1436 ntBASIC18.98■□□□□ 0.63
VPS35Q96QK1 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS35Q96QK1 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS35Q96QK1 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS35Q96QK1 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS35Q96QK1 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS35Q96QK1 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
VPS35Q96QK1 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS35Q96QK1 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS35Q96QK1 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS35Q96QK1 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
VPS35Q96QK1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS35Q96QK1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS35Q96QK1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS35Q96QK1 TSPY23P-201ENST00000440136 739 ntBASIC18.97■□□□□ 0.63
VPS35Q96QK1 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms