Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 AP000525.1-201ENST00000608286 694 ntBASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 AC079598.2-202ENST00000546624 1451 ntBASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PTCHD1Q96NR3 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 SDHAP1-207ENST00000440850 2000 ntBASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 KRT8P41-201ENST00000533985 1514 ntBASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 AC097488.1-201ENST00000507834 756 ntBASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 SLC25A1P4-201ENST00000567977 778 ntBASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 DGCR10-201ENST00000609839 495 ntBASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 AC073912.3-201ENST00000624414 853 ntBASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PTCHD1Q96NR3 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 MMP23A-201ENST00000234610 1017 ntBASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 MIR1238-201ENST00000408483 83 ntBASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 AP000692.2-201ENST00000608391 879 ntBASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTCHD1Q96NR3 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.03■□□□□ 0.48
PTCHD1Q96NR3 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms