Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
TTC28Q96AY4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.5■□□□□ 0.71
TTC28Q96AY4 AC002347.1-201ENST00000569543 541 ntBASIC19.5■□□□□ 0.71
TTC28Q96AY4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.5■□□□□ 0.71
TTC28Q96AY4 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.5■□□□□ 0.71
TTC28Q96AY4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TTC28Q96AY4 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 AC190387.1-201ENST00000551683 408 ntBASIC19.49■□□□□ 0.71
TTC28Q96AY4 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 AC011467.4-201ENST00000594891 528 ntBASIC19.49■□□□□ 0.71
TTC28Q96AY4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.49■□□□□ 0.71
TTC28Q96AY4 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TTC28Q96AY4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 BCRP1-201ENST00000444246 691 ntBASIC19.48■□□□□ 0.71
TTC28Q96AY4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.48■□□□□ 0.71
TTC28Q96AY4 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.48■□□□□ 0.71
TTC28Q96AY4 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.48■□□□□ 0.71
TTC28Q96AY4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.48■□□□□ 0.71
TTC28Q96AY4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.48■□□□□ 0.71
TTC28Q96AY4 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.48■□□□□ 0.71
TTC28Q96AY4 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.48■□□□□ 0.71
TTC28Q96AY4 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.48■□□□□ 0.71
TTC28Q96AY4 AL355877.3-201ENST00000622820 899 ntBASIC19.48■□□□□ 0.71
TTC28Q96AY4 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
TTC28Q96AY4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TTC28Q96AY4 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TTC28Q96AY4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TTC28Q96AY4 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TTC28Q96AY4 HLA-V-201ENST00000429037 534 ntBASIC19.47■□□□□ 0.71
TTC28Q96AY4 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.47■□□□□ 0.71
TTC28Q96AY4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 AC023274.1-201ENST00000418278 595 ntBASIC19.46■□□□□ 0.71
TTC28Q96AY4 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TTC28Q96AY4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TTC28Q96AY4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TTC28Q96AY4 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TTC28Q96AY4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
TTC28Q96AY4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TTC28Q96AY4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
TTC28Q96AY4 AL591684.3-201ENST00000605187 298 ntBASIC19.46■□□□□ 0.71
TTC28Q96AY4 AF228730.6-201ENST00000641497 218 ntBASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms