Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USHBP1Q8N6Y0 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 AC092597.1-201ENST00000487352 616 ntBASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 LY6E-213ENST00000522528 606 ntTSL 3 BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
USHBP1Q8N6Y0 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USHBP1Q8N6Y0 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 NDUFV2-AS1-203ENST00000608008 779 ntBASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
USHBP1Q8N6Y0 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 AC036111.1-201ENST00000533973 1582 ntBASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 GAD2-202ENST00000376248 680 ntTSL 5 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 FGF14-AS2-201ENST00000606448 1074 ntBASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC25.24■■□□□ 1.63
USHBP1Q8N6Y0 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 CLN6-214ENST00000636314 442 ntTSL 3 BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 GOLGA6L5P-202ENST00000515341 1828 ntBASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
USHBP1Q8N6Y0 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 CNP-204ENST00000472031 1019 ntTSL 2 BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USHBP1Q8N6Y0 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms