Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HDDC3Q8N4P3 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 AP003041.3-201ENST00000527151 707 ntBASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 LINC01521-201ENST00000504184 1943 ntBASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HDDC3Q8N4P3 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 PCED1CP-201ENST00000419887 785 ntBASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 AL512604.3-201ENST00000569583 964 ntBASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 AC093458.2-201ENST00000623150 629 ntBASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 AL121956.5-201ENST00000625261 221 ntBASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 AC141257.4-201ENST00000634557 245 ntBASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 AC136944.6-201ENST00000634818 245 ntBASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.2■□□□□ 0.66
HDDC3Q8N4P3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
HDDC3Q8N4P3 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms