Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 DUSP5P2-201ENST00000426873 1033 ntBASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 AP000997.3-201ENST00000623333 2250 ntBASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PPP4R4Q6NUP7 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 KRT18P68-201ENST00000392293 1000 ntBASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 AC142086.2-201ENST00000569753 217 ntBASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 NOC2LP2-201ENST00000407594 1944 ntBASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PPP4R4Q6NUP7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 BICD1-207ENST00000551848 1962 ntBASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 PGM5P4-201ENST00000421970 445 ntBASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PPP4R4Q6NUP7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 AC097658.1-201ENST00000475555 843 ntBASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 RNA5SP413-201ENST00000516373 109 ntBASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 AC092118.2-201ENST00000613495 667 ntBASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 AC100791.3-201ENST00000617619 330 ntBASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms