Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.47■□□□□ 0.71
USP39Q53GS9 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.47■□□□□ 0.71
USP39Q53GS9 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 AL353719.1-201ENST00000566847 864 ntBASIC19.47■□□□□ 0.71
USP39Q53GS9 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP39Q53GS9 AL023803.3-201ENST00000615559 522 ntBASIC19.47■□□□□ 0.71
USP39Q53GS9 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.47■□□□□ 0.71
USP39Q53GS9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP39Q53GS9 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP39Q53GS9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP39Q53GS9 TMEM179-206ENST00000616017 1645 ntBASIC19.47■□□□□ 0.71
USP39Q53GS9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.47■□□□□ 0.71
USP39Q53GS9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP39Q53GS9 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP39Q53GS9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
USP39Q53GS9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
USP39Q53GS9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP39Q53GS9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP39Q53GS9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
USP39Q53GS9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.46■□□□□ 0.71
USP39Q53GS9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
USP39Q53GS9 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.46■□□□□ 0.71
USP39Q53GS9 PCED1CP-201ENST00000419887 785 ntBASIC19.46■□□□□ 0.71
USP39Q53GS9 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.46■□□□□ 0.71
USP39Q53GS9 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP39Q53GS9 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
USP39Q53GS9 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.46■□□□□ 0.71
USP39Q53GS9 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.46■□□□□ 0.71
USP39Q53GS9 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.46■□□□□ 0.71
USP39Q53GS9 KRT126P-201ENST00000549467 1181 ntBASIC19.46■□□□□ 0.71
USP39Q53GS9 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.46■□□□□ 0.71
USP39Q53GS9 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
USP39Q53GS9 TCF3P1-201ENST00000423021 1937 ntBASIC19.46■□□□□ 0.71
USP39Q53GS9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP39Q53GS9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
USP39Q53GS9 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.46■□□□□ 0.71
USP39Q53GS9 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
USP39Q53GS9 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP39Q53GS9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
USP39Q53GS9 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP39Q53GS9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP39Q53GS9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP39Q53GS9 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.45■□□□□ 0.7
USP39Q53GS9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 KRT8P8-201ENST00000434750 1448 ntBASIC19.45■□□□□ 0.7
USP39Q53GS9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.45■□□□□ 0.7
USP39Q53GS9 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.45■□□□□ 0.7
USP39Q53GS9 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.45■□□□□ 0.7
USP39Q53GS9 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.45■□□□□ 0.7
USP39Q53GS9 Z85996.1-201ENST00000494644 937 ntBASIC19.45■□□□□ 0.7
USP39Q53GS9 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.45■□□□□ 0.7
USP39Q53GS9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.45■□□□□ 0.7
USP39Q53GS9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.45■□□□□ 0.7
USP39Q53GS9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USP39Q53GS9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP39Q53GS9 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
USP39Q53GS9 SMG8-203ENST00000578922 2178 ntBASIC19.44■□□□□ 0.7
USP39Q53GS9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP39Q53GS9 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP39Q53GS9 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP39Q53GS9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
USP39Q53GS9 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.44■□□□□ 0.7
USP39Q53GS9 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.44■□□□□ 0.7
USP39Q53GS9 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP39Q53GS9 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.44■□□□□ 0.7
USP39Q53GS9 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.44■□□□□ 0.7
USP39Q53GS9 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.44■□□□□ 0.7
USP39Q53GS9 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.44■□□□□ 0.7
USP39Q53GS9 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
USP39Q53GS9 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP39Q53GS9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP39Q53GS9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP39Q53GS9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP39Q53GS9 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP39Q53GS9 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP39Q53GS9 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP39Q53GS9 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP39Q53GS9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.43■□□□□ 0.7
USP39Q53GS9 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP39Q53GS9 KRT18P48-201ENST00000434763 852 ntBASIC19.43■□□□□ 0.7
USP39Q53GS9 CA15P1-201ENST00000481698 905 ntBASIC19.43■□□□□ 0.7
USP39Q53GS9 FAM86EP-206ENST00000510506 987 ntBASIC19.43■□□□□ 0.7
USP39Q53GS9 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.43■□□□□ 0.7
USP39Q53GS9 AL160286.2-201ENST00000567150 934 ntBASIC19.43■□□□□ 0.7
USP39Q53GS9 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.43■□□□□ 0.7
USP39Q53GS9 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.43■□□□□ 0.7
USP39Q53GS9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP39Q53GS9 IER3-202ENST00000376377 1350 ntBASIC19.43■□□□□ 0.7
USP39Q53GS9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP39Q53GS9 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms