Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
HDAC4P56524 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 KRT16P1-201ENST00000399124 1418 ntBASIC20.01■□□□□ 0.79
HDAC4P56524 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.01■□□□□ 0.79
HDAC4P56524 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDAC4P56524 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20■□□□□ 0.79
HDAC4P56524 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
HDAC4P56524 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20■□□□□ 0.79
HDAC4P56524 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20■□□□□ 0.79
HDAC4P56524 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20■□□□□ 0.79
HDAC4P56524 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 RPS2P55-201ENST00000397318 883 ntBASIC20■□□□□ 0.79
HDAC4P56524 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
HDAC4P56524 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20■□□□□ 0.79
HDAC4P56524 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20■□□□□ 0.79
HDAC4P56524 AC107956.1-201ENST00000494359 873 ntBASIC20■□□□□ 0.79
HDAC4P56524 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20■□□□□ 0.79
HDAC4P56524 USP36-216ENST00000589424 970 ntTSL 5 BASIC20■□□□□ 0.79
HDAC4P56524 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 AC131212.4-201ENST00000623606 975 ntBASIC20■□□□□ 0.79
HDAC4P56524 CR392000.1-201ENST00000624770 1228 ntBASIC20■□□□□ 0.79
HDAC4P56524 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20■□□□□ 0.79
HDAC4P56524 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
HDAC4P56524 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20■□□□□ 0.79
HDAC4P56524 AL135905.2-201ENST00000584934 1404 ntBASIC20■□□□□ 0.79
HDAC4P56524 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
HDAC4P56524 AL161938.1-201ENST00000569833 2180 ntBASIC20■□□□□ 0.79
HDAC4P56524 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
HDAC4P56524 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
HDAC4P56524 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
HDAC4P56524 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.99■□□□□ 0.79
HDAC4P56524 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
HDAC4P56524 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.99■□□□□ 0.79
HDAC4P56524 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.99■□□□□ 0.79
HDAC4P56524 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.99■□□□□ 0.79
HDAC4P56524 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.99■□□□□ 0.79
HDAC4P56524 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
HDAC4P56524 AL049812.1-201ENST00000432563 2267 ntBASIC19.99■□□□□ 0.79
HDAC4P56524 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.98■□□□□ 0.79
HDAC4P56524 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.98■□□□□ 0.79
HDAC4P56524 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
HDAC4P56524 AC012618.2-201ENST00000428058 849 ntBASIC19.98■□□□□ 0.79
HDAC4P56524 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.98■□□□□ 0.79
HDAC4P56524 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 AC233702.5-201ENST00000584107 538 ntBASIC19.98■□□□□ 0.79
HDAC4P56524 Z99916.2-201ENST00000604037 246 ntBASIC19.98■□□□□ 0.79
HDAC4P56524 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.98■□□□□ 0.79
HDAC4P56524 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.98■□□□□ 0.79
HDAC4P56524 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.98■□□□□ 0.79
HDAC4P56524 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.98■□□□□ 0.79
HDAC4P56524 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.98■□□□□ 0.79
HDAC4P56524 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HDAC4P56524 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
HDAC4P56524 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.97■□□□□ 0.79
HDAC4P56524 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
HDAC4P56524 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
HDAC4P56524 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
HDAC4P56524 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
HDAC4P56524 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HDAC4P56524 AP000974.1-201ENST00000623909 2387 ntBASIC19.97■□□□□ 0.79
HDAC4P56524 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms