Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
HTTP42858 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HTTP42858 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
HTTP42858 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
HTTP42858 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
HTTP42858 MIR662-201ENST00000384847 95 ntBASIC21.58■■□□□ 1.05
HTTP42858 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.58■■□□□ 1.05
HTTP42858 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
HTTP42858 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HTTP42858 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HTTP42858 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.58■■□□□ 1.05
HTTP42858 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HTTP42858 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
HTTP42858 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.58■■□□□ 1.04
HTTP42858 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.58■■□□□ 1.04
HTTP42858 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
HTTP42858 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HTTP42858 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HTTP42858 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
HTTP42858 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HTTP42858 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.58■■□□□ 1.04
HTTP42858 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.58■■□□□ 1.04
HTTP42858 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
HTTP42858 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HTTP42858 AL691432.2-201ENST00000607222 2038 ntBASIC21.57■■□□□ 1.04
HTTP42858 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
HTTP42858 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HTTP42858 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HTTP42858 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.57■■□□□ 1.04
HTTP42858 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC21.57■■□□□ 1.04
HTTP42858 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
HTTP42858 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HTTP42858 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
HTTP42858 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HTTP42858 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.57■■□□□ 1.04
HTTP42858 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HTTP42858 RPL18-209ENST00000550645 463 ntTSL 5 BASIC21.57■■□□□ 1.04
HTTP42858 RPL18-214ENST00000552588 559 ntTSL 3 BASIC21.57■■□□□ 1.04
HTTP42858 TP73-AS1-207ENST00000624167 988 ntBASIC21.57■■□□□ 1.04
HTTP42858 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HTTP42858 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.56■■□□□ 1.04
HTTP42858 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.56■■□□□ 1.04
HTTP42858 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC21.56■■□□□ 1.04
HTTP42858 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.56■■□□□ 1.04
HTTP42858 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.56■■□□□ 1.04
HTTP42858 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HTTP42858 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
HTTP42858 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.56■■□□□ 1.04
HTTP42858 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HTTP42858 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HTTP42858 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HTTP42858 PGAM5P1-201ENST00000518923 814 ntBASIC21.55■■□□□ 1.04
HTTP42858 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC21.55■■□□□ 1.04
HTTP42858 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HTTP42858 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HTTP42858 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HTTP42858 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
HTTP42858 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HTTP42858 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.55■■□□□ 1.04
HTTP42858 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HTTP42858 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HTTP42858 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.55■■□□□ 1.04
HTTP42858 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
HTTP42858 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21.55■■□□□ 1.04
HTTP42858 AC026310.3-201ENST00000625186 2373 ntBASIC21.55■■□□□ 1.04
HTTP42858 AC133561.1-201ENST00000568600 2415 ntBASIC21.55■■□□□ 1.04
HTTP42858 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HTTP42858 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
HTTP42858 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC21.54■■□□□ 1.04
HTTP42858 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 AC055717.3-201ENST00000622967 595 ntBASIC21.54■■□□□ 1.04
HTTP42858 ABBA01031661.1-201ENST00000634362 1253 ntBASIC21.54■■□□□ 1.04
HTTP42858 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
HTTP42858 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.54■■□□□ 1.04
HTTP42858 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 POLD2P1-201ENST00000511220 997 ntBASIC21.54■■□□□ 1.04
HTTP42858 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.54■■□□□ 1.04
HTTP42858 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HTTP42858 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms