Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.73■□□□□ 0.75
COL9A1P20849 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL9A1P20849 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL9A1P20849 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.73■□□□□ 0.75
COL9A1P20849 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL9A1P20849 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.73■□□□□ 0.75
COL9A1P20849 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.73■□□□□ 0.75
COL9A1P20849 TMEM179-206ENST00000616017 1645 ntBASIC19.73■□□□□ 0.75
COL9A1P20849 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.72■□□□□ 0.75
COL9A1P20849 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL9A1P20849 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.72■□□□□ 0.75
COL9A1P20849 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
COL9A1P20849 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL9A1P20849 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.72■□□□□ 0.75
COL9A1P20849 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL9A1P20849 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
COL9A1P20849 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
COL9A1P20849 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL9A1P20849 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.72■□□□□ 0.75
COL9A1P20849 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.72■□□□□ 0.75
COL9A1P20849 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.72■□□□□ 0.75
COL9A1P20849 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL9A1P20849 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
COL9A1P20849 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.72■□□□□ 0.75
COL9A1P20849 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.72■□□□□ 0.75
COL9A1P20849 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
COL9A1P20849 AC010327.4-202ENST00000591484 748 ntBASIC19.72■□□□□ 0.75
COL9A1P20849 AL773604.1-201ENST00000617417 272 ntBASIC19.72■□□□□ 0.75
COL9A1P20849 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.72■□□□□ 0.75
COL9A1P20849 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL9A1P20849 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.72■□□□□ 0.75
COL9A1P20849 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL9A1P20849 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL9A1P20849 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
COL9A1P20849 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
COL9A1P20849 LBH-203ENST00000404397 543 ntTSL 4 BASIC19.71■□□□□ 0.75
COL9A1P20849 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.71■□□□□ 0.75
COL9A1P20849 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.71■□□□□ 0.75
COL9A1P20849 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.71■□□□□ 0.75
COL9A1P20849 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.71■□□□□ 0.75
COL9A1P20849 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
COL9A1P20849 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
COL9A1P20849 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
COL9A1P20849 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
COL9A1P20849 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.71■□□□□ 0.75
COL9A1P20849 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.71■□□□□ 0.75
COL9A1P20849 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.71■□□□□ 0.75
COL9A1P20849 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.71■□□□□ 0.75
COL9A1P20849 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
COL9A1P20849 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.71■□□□□ 0.75
COL9A1P20849 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL9A1P20849 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL9A1P20849 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
COL9A1P20849 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL9A1P20849 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL9A1P20849 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL9A1P20849 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL9A1P20849 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL9A1P20849 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
COL9A1P20849 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL9A1P20849 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.7■□□□□ 0.74
COL9A1P20849 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.7■□□□□ 0.74
COL9A1P20849 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.7■□□□□ 0.74
COL9A1P20849 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
COL9A1P20849 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.7■□□□□ 0.74
COL9A1P20849 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL9A1P20849 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL9A1P20849 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL9A1P20849 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL9A1P20849 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL9A1P20849 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL9A1P20849 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL9A1P20849 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL9A1P20849 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
COL9A1P20849 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL9A1P20849 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL9A1P20849 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL9A1P20849 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.69■□□□□ 0.74
COL9A1P20849 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.69■□□□□ 0.74
COL9A1P20849 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.69■□□□□ 0.74
COL9A1P20849 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL9A1P20849 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.69■□□□□ 0.74
COL9A1P20849 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.69■□□□□ 0.74
COL9A1P20849 LINC00265-3P-201ENST00000447588 903 ntBASIC19.69■□□□□ 0.74
COL9A1P20849 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL9A1P20849 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.69■□□□□ 0.74
COL9A1P20849 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.69■□□□□ 0.74
COL9A1P20849 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.69■□□□□ 0.74
COL9A1P20849 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.69■□□□□ 0.74
COL9A1P20849 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms