Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RB1P06400 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RB1P06400 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.27■□□□□ 0.84
RB1P06400 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.27■□□□□ 0.84
RB1P06400 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
RB1P06400 AP002414.4-201ENST00000589764 1148 ntBASIC20.27■□□□□ 0.84
RB1P06400 AC024243.1-201ENST00000609234 778 ntBASIC20.27■□□□□ 0.84
RB1P06400 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
RB1P06400 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.27■□□□□ 0.84
RB1P06400 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RB1P06400 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.27■□□□□ 0.83
RB1P06400 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.27■□□□□ 0.83
RB1P06400 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
RB1P06400 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RB1P06400 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
RB1P06400 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.26■□□□□ 0.83
RB1P06400 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 AC093525.10-201ENST00000625130 1569 ntBASIC20.26■□□□□ 0.83
RB1P06400 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.26■□□□□ 0.83
RB1P06400 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
RB1P06400 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.26■□□□□ 0.83
RB1P06400 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RB1P06400 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.26■□□□□ 0.83
RB1P06400 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.26■□□□□ 0.83
RB1P06400 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.26■□□□□ 0.83
RB1P06400 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
RB1P06400 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.26■□□□□ 0.83
RB1P06400 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.26■□□□□ 0.83
RB1P06400 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RB1P06400 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.26■□□□□ 0.83
RB1P06400 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RB1P06400 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.26■□□□□ 0.83
RB1P06400 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RB1P06400 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RB1P06400 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
RB1P06400 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.25■□□□□ 0.83
RB1P06400 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RB1P06400 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
RB1P06400 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RB1P06400 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
RB1P06400 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RB1P06400 CHCHD2P8-201ENST00000429873 447 ntBASIC20.25■□□□□ 0.83
RB1P06400 PVRIG2P-201ENST00000435460 978 ntBASIC20.25■□□□□ 0.83
RB1P06400 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.25■□□□□ 0.83
RB1P06400 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.25■□□□□ 0.83
RB1P06400 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RB1P06400 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.25■□□□□ 0.83
RB1P06400 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RB1P06400 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
RB1P06400 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RB1P06400 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.25■□□□□ 0.83
RB1P06400 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RB1P06400 AC020907.5-201ENST00000624372 1936 ntBASIC20.25■□□□□ 0.83
RB1P06400 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.25■□□□□ 0.83
RB1P06400 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
RB1P06400 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.25■□□□□ 0.83
RB1P06400 AL162741.1-201ENST00000565563 1558 ntBASIC20.25■□□□□ 0.83
RB1P06400 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.25■□□□□ 0.83
RB1P06400 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.24■□□□□ 0.83
RB1P06400 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.24■□□□□ 0.83
RB1P06400 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RB1P06400 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.24■□□□□ 0.83
RB1P06400 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
RB1P06400 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RB1P06400 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
RB1P06400 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.24■□□□□ 0.83
RB1P06400 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.24■□□□□ 0.83
RB1P06400 HLA-F-220ENST00000434407 884 ntBASIC20.24■□□□□ 0.83
RB1P06400 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.24■□□□□ 0.83
RB1P06400 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.24■□□□□ 0.83
RB1P06400 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.24■□□□□ 0.83
RB1P06400 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
RB1P06400 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RB1P06400 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
RB1P06400 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RB1P06400 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RB1P06400 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
RB1P06400 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.23■□□□□ 0.83
RB1P06400 GPAT2P1-201ENST00000444924 1672 ntBASIC20.23■□□□□ 0.83
RB1P06400 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RB1P06400 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
RB1P06400 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RB1P06400 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.23■□□□□ 0.83
RB1P06400 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms