Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
LDLRP01130 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.48■□□□□ 0.55
LDLRP01130 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.48■□□□□ 0.55
LDLRP01130 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LDLRP01130 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LDLRP01130 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
LDLRP01130 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.47■□□□□ 0.55
LDLRP01130 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.47■□□□□ 0.55
LDLRP01130 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 AC091799.1-201ENST00000422823 811 ntBASIC18.47■□□□□ 0.55
LDLRP01130 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.47■□□□□ 0.55
LDLRP01130 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.47■□□□□ 0.55
LDLRP01130 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.47■□□□□ 0.55
LDLRP01130 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
LDLRP01130 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
LDLRP01130 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
LDLRP01130 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LDLRP01130 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.46■□□□□ 0.55
LDLRP01130 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
LDLRP01130 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.46■□□□□ 0.55
LDLRP01130 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
LDLRP01130 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
LDLRP01130 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
LDLRP01130 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.46■□□□□ 0.55
LDLRP01130 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.46■□□□□ 0.55
LDLRP01130 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.46■□□□□ 0.55
LDLRP01130 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.46■□□□□ 0.55
LDLRP01130 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.46■□□□□ 0.55
LDLRP01130 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.46■□□□□ 0.55
LDLRP01130 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.46■□□□□ 0.55
LDLRP01130 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
LDLRP01130 CROCCP3-202ENST00000420820 1947 ntBASIC18.46■□□□□ 0.55
LDLRP01130 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.46■□□□□ 0.55
LDLRP01130 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
LDLRP01130 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
LDLRP01130 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
LDLRP01130 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
LDLRP01130 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.46■□□□□ 0.55
LDLRP01130 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.46■□□□□ 0.55
LDLRP01130 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LDLRP01130 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.46■□□□□ 0.55
LDLRP01130 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.46■□□□□ 0.54
LDLRP01130 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
LDLRP01130 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.45■□□□□ 0.54
LDLRP01130 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 AC087499.1-201ENST00000418141 1075 ntBASIC18.45■□□□□ 0.54
LDLRP01130 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.45■□□□□ 0.54
LDLRP01130 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.45■□□□□ 0.54
LDLRP01130 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.45■□□□□ 0.54
LDLRP01130 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 AL049812.1-201ENST00000432563 2267 ntBASIC18.45■□□□□ 0.54
LDLRP01130 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
LDLRP01130 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
LDLRP01130 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
LDLRP01130 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.45■□□□□ 0.54
LDLRP01130 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.45■□□□□ 0.54
LDLRP01130 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
LDLRP01130 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.44■□□□□ 0.54
LDLRP01130 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
LDLRP01130 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
LDLRP01130 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms