Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CACNA1AO00555 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1AO00555 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.09■□□□□ 0.49
CACNA1AO00555 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1AO00555 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1AO00555 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CACNA1AO00555 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CACNA1AO00555 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
CACNA1AO00555 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1AO00555 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.49
CACNA1AO00555 YBX1P5-201ENST00000509441 847 ntBASIC18.08■□□□□ 0.49
CACNA1AO00555 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.08■□□□□ 0.49
CACNA1AO00555 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CACNA1AO00555 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1AO00555 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CACNA1AO00555 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CACNA1AO00555 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.08■□□□□ 0.48
CACNA1AO00555 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CACNA1AO00555 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.08■□□□□ 0.48
CACNA1AO00555 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CACNA1AO00555 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
CACNA1AO00555 MTDHP5-201ENST00000598980 586 ntBASIC18.08■□□□□ 0.48
CACNA1AO00555 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CACNA1AO00555 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CACNA1AO00555 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.08■□□□□ 0.48
CACNA1AO00555 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CACNA1AO00555 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CACNA1AO00555 NUS1P2-201ENST00000417358 873 ntBASIC18.07■□□□□ 0.48
CACNA1AO00555 VENTXP7-201ENST00000475503 772 ntBASIC18.07■□□□□ 0.48
CACNA1AO00555 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CACNA1AO00555 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC18.07■□□□□ 0.48
CACNA1AO00555 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.07■□□□□ 0.48
CACNA1AO00555 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.07■□□□□ 0.48
CACNA1AO00555 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CACNA1AO00555 AL592071.1-201ENST00000611956 408 ntBASIC18.07■□□□□ 0.48
CACNA1AO00555 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.07■□□□□ 0.48
CACNA1AO00555 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CACNA1AO00555 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CACNA1AO00555 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.07■□□□□ 0.48
CACNA1AO00555 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CACNA1AO00555 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CACNA1AO00555 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC18.07■□□□□ 0.48
CACNA1AO00555 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CACNA1AO00555 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.07■□□□□ 0.48
CACNA1AO00555 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.07■□□□□ 0.48
CACNA1AO00555 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CACNA1AO00555 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.07■□□□□ 0.48
CACNA1AO00555 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.07■□□□□ 0.48
CACNA1AO00555 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CACNA1AO00555 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.07■□□□□ 0.48
CACNA1AO00555 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CACNA1AO00555 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CACNA1AO00555 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.06■□□□□ 0.48
CACNA1AO00555 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CACNA1AO00555 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CACNA1AO00555 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CACNA1AO00555 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CACNA1AO00555 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CACNA1AO00555 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.06■□□□□ 0.48
CACNA1AO00555 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.06■□□□□ 0.48
CACNA1AO00555 MIR3917-201ENST00000580971 93 ntBASIC18.06■□□□□ 0.48
CACNA1AO00555 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.06■□□□□ 0.48
CACNA1AO00555 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CACNA1AO00555 KRT18P23-201ENST00000435622 1283 ntBASIC18.06■□□□□ 0.48
CACNA1AO00555 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.06■□□□□ 0.48
CACNA1AO00555 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.06■□□□□ 0.48
CACNA1AO00555 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.06■□□□□ 0.48
CACNA1AO00555 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.06■□□□□ 0.48
CACNA1AO00555 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.06■□□□□ 0.48
CACNA1AO00555 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.06■□□□□ 0.48
CACNA1AO00555 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CACNA1AO00555 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CACNA1AO00555 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.06■□□□□ 0.48
CACNA1AO00555 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CACNA1AO00555 AC242852.2-201ENST00000615738 1807 ntBASIC18.06■□□□□ 0.48
CACNA1AO00555 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CACNA1AO00555 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.05■□□□□ 0.48
CACNA1AO00555 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.05■□□□□ 0.48
CACNA1AO00555 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.05■□□□□ 0.48
CACNA1AO00555 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.05■□□□□ 0.48
CACNA1AO00555 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.05■□□□□ 0.48
CACNA1AO00555 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.05■□□□□ 0.48
CACNA1AO00555 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CACNA1AO00555 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CACNA1AO00555 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.05■□□□□ 0.48
CACNA1AO00555 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.05■□□□□ 0.48
CACNA1AO00555 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CACNA1AO00555 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CACNA1AO00555 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CACNA1AO00555 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CACNA1AO00555 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.05■□□□□ 0.48
CACNA1AO00555 AC254562.1-201ENST00000417586 456 ntBASIC18.05■□□□□ 0.48
CACNA1AO00555 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.05■□□□□ 0.48
CACNA1AO00555 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CACNA1AO00555 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.05■□□□□ 0.48
CACNA1AO00555 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CACNA1AO00555 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CACNA1AO00555 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.04■□□□□ 0.48
CACNA1AO00555 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CACNA1AO00555 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms