Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPK1AO00322 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPK1AO00322 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPK1AO00322 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UPK1AO00322 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UPK1AO00322 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UPK1AO00322 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.18■□□□□ 0.5
UPK1AO00322 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
UPK1AO00322 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.17■□□□□ 0.5
UPK1AO00322 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.17■□□□□ 0.5
UPK1AO00322 MIR4651-201ENST00000582622 73 ntBASIC18.17■□□□□ 0.5
UPK1AO00322 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.17■□□□□ 0.5
UPK1AO00322 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.17■□□□□ 0.5
UPK1AO00322 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.17■□□□□ 0.5
UPK1AO00322 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.17■□□□□ 0.5
UPK1AO00322 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.17■□□□□ 0.5
UPK1AO00322 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.17■□□□□ 0.5
UPK1AO00322 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
UPK1AO00322 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.16■□□□□ 0.5
UPK1AO00322 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.16■□□□□ 0.5
UPK1AO00322 TEX21P-204ENST00000641479 1693 ntBASIC18.16■□□□□ 0.5
UPK1AO00322 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 NBPF21P-201ENST00000425093 1451 ntBASIC18.16■□□□□ 0.5
UPK1AO00322 ZNF815P-204ENST00000434898 1737 ntBASIC18.16■□□□□ 0.5
UPK1AO00322 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
UPK1AO00322 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
UPK1AO00322 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
UPK1AO00322 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.16■□□□□ 0.5
UPK1AO00322 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.16■□□□□ 0.5
UPK1AO00322 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.16■□□□□ 0.5
UPK1AO00322 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.16■□□□□ 0.5
UPK1AO00322 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.16■□□□□ 0.5
UPK1AO00322 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 AL031598.1-201ENST00000561511 1773 ntBASIC18.16■□□□□ 0.5
UPK1AO00322 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UPK1AO00322 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.16■□□□□ 0.5
UPK1AO00322 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
UPK1AO00322 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
UPK1AO00322 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.15■□□□□ 0.5
UPK1AO00322 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.15■□□□□ 0.5
UPK1AO00322 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.15■□□□□ 0.5
UPK1AO00322 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
UPK1AO00322 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.15■□□□□ 0.5
UPK1AO00322 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.15■□□□□ 0.5
UPK1AO00322 AC141586.3-201ENST00000562166 1838 ntBASIC18.15■□□□□ 0.5
UPK1AO00322 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
UPK1AO00322 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
UPK1AO00322 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.15■□□□□ 0.5
UPK1AO00322 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.15■□□□□ 0.5
UPK1AO00322 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
UPK1AO00322 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
UPK1AO00322 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
UPK1AO00322 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.15■□□□□ 0.5
UPK1AO00322 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.15■□□□□ 0.5
UPK1AO00322 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.15■□□□□ 0.5
UPK1AO00322 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
UPK1AO00322 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.15■□□□□ 0.5
UPK1AO00322 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
UPK1AO00322 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
UPK1AO00322 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
UPK1AO00322 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
UPK1AO00322 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
UPK1AO00322 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
UPK1AO00322 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
UPK1AO00322 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms