Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRAV41A0A0B4J266 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 AC007952.6-201ENST00000573168 2673 ntBASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 AC003957.1-201ENST00000625108 2673 ntBASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 AL596275.1-201ENST00000423464 877 ntBASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 AC116562.2-201ENST00000507042 360 ntBASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 REXO1L10P-201ENST00000615707 1290 ntBASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 REXO1L12P-201ENST00000622156 912 ntBASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC15.09■□□□□ 0.01
TRAV41A0A0B4J266 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC15.08■□□□□ 0.01
TRAV41A0A0B4J266 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRAV41A0A0B4J266 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRAV41A0A0B4J266 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
TRAV41A0A0B4J266 KRT8P41-201ENST00000533985 1514 ntBASIC15.08■□□□□ 0.01
TRAV41A0A0B4J266 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 TSPY21P-201ENST00000433481 731 ntBASIC15.08■□□□□ 0
TRAV41A0A0B4J266 FAM207BP-201ENST00000447172 505 ntBASIC15.08■□□□□ 0
TRAV41A0A0B4J266 AC011506.1-201ENST00000474329 610 ntBASIC15.08■□□□□ 0
TRAV41A0A0B4J266 AC091390.4-202ENST00000476426 537 ntBASIC15.08■□□□□ 0
TRAV41A0A0B4J266 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 DGCR10-201ENST00000609839 495 ntBASIC15.08■□□□□ 0
TRAV41A0A0B4J266 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 AC130371.2-201ENST00000619443 611 ntBASIC15.08■□□□□ 0
TRAV41A0A0B4J266 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 AC120498.9-201ENST00000339021 3867 ntBASIC15.08■□□□□ 0
TRAV41A0A0B4J266 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRAV41A0A0B4J266 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 AL032819.2-201ENST00000624543 2162 ntBASIC15.07■□□□□ 0
TRAV41A0A0B4J266 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC15.07■□□□□ 0
TRAV41A0A0B4J266 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms