Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 TIMM9P3-201ENST00000428659 274 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 TBCAP1-201ENST00000436520 327 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 RANP8-201ENST00000444720 713 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 NUTF2P3-201ENST00000448540 384 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AL353691.1-201ENST00000451332 387 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 ST13P14-201ENST00000474095 734 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 RPL21P103-201ENST00000479921 488 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC108078.1-201ENST00000508073 725 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 RNU6-27P-201ENST00000516146 107 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 RNA5SP143-201ENST00000516936 115 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC087369.1-201ENST00000520775 996 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 MIR4458-201ENST00000578872 75 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AL139286.1-201ENST00000604465 483 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC006329.2-201ENST00000611491 394 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 AC124864.2-201ENST00000624736 186 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 ANKRD36BP1-202ENST00000604892 1417 ntBASIC4.63□□□□□ -1.67
LIMCH1Q9UPQ0 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC027287.1-201ENST00000553115 1453 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 RNU6-821P-201ENST00000390995 107 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC078974.1-201ENST00000411597 223 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC005517.2-201ENST00000424673 553 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 SNORD121B-201ENST00000458838 81 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 RPL23AP2-201ENST00000471227 466 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC012170.1-201ENST00000495139 359 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 RNU6-314P-201ENST00000516574 104 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 RNA5SP179-201ENST00000517284 121 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 MED28P5-201ENST00000528254 438 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC090877.1-201ENST00000561418 344 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC099489.2-201ENST00000574976 260 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC020914.4-201ENST00000597690 277 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AC091167.4-201ENST00000605079 184 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AL109618.2-201ENST00000605527 211 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 U73479.1-201ENST00000618062 168 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 AL158209.2-201ENST00000619266 216 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 RMST_9.1-201ENST00000619945 193 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 NCAPGP1-201ENST00000505112 1814 ntBASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIMCH1Q9UPQ0 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 MIR153-1-201ENST00000384914 90 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 RPL17P50-201ENST00000396131 546 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 RNA5SP56-201ENST00000410277 118 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 BX295541.1-201ENST00000417774 250 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 USP9YP18-201ENST00000425912 695 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 ISCA1P6-201ENST00000427740 390 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AL049734.2-201ENST00000441066 616 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 RPL23AP33-201ENST00000442301 452 ntBASIC4.61□□□□□ -1.67
LIMCH1Q9UPQ0 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms