Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC006960.3-201ENST00000561845 705 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AP005205.1-201ENST00000563503 508 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 MIR4429-201ENST00000580105 73 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 COX6CP3-201ENST00000580869 223 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC106900.2-201ENST00000604994 317 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC026790.2-201ENST00000606282 430 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AP002826.1-201ENST00000608835 315 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 AC087683.2-201ENST00000611384 326 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 AL136164.4-201ENST00000625013 2135 ntBASIC3.8□□□□□ -1.8
VPS28Q9UK41 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS28Q9UK41 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS28Q9UK41 AP000526.1-201ENST00000603308 1388 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS28Q9UK41 AL391994.1-201ENST00000254724 282 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 AP000568.1-201ENST00000282964 442 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 RNU6-1078P-201ENST00000364522 103 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 MIR23B-201ENST00000384832 97 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 SETP5-201ENST00000437270 562 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS28Q9UK41 LSM1P1-201ENST00000438629 273 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 AC112653.1-201ENST00000443851 386 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 AP000542.1-201ENST00000448473 371 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 SSXP4-201ENST00000451349 245 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 RPL7P47-201ENST00000497299 556 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 ARL2BPP6-201ENST00000512757 439 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 RN7SKP83-201ENST00000516512 178 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 AC068587.4-201ENST00000533893 186 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 OR7K1P-201ENST00000546439 926 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 AL121766.1-201ENST00000547436 487 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 ELOCP32-201ENST00000548625 324 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 GTF2IP22-201ENST00000554443 182 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 BRDTP1-201ENST00000605735 677 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 RNU1-30P-201ENST00000606575 163 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 AL450472.3-201ENST00000615578 367 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 AC091905.1-201ENST00000624400 311 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 AL034408.1-202ENST00000636088 415 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 AP000553.6-201ENST00000641242 118 ntBASIC3.79□□□□□ -1.8
VPS28Q9UK41 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS28Q9UK41 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS28Q9UK41 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS28Q9UK41 CEP170P1-201ENST00000502249 4587 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS28Q9UK41 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS28Q9UK41 DEFB108F-201ENST00000344638 222 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 RNU6-433P-201ENST00000363216 104 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 RNU6-853P-201ENST00000364306 107 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS28Q9UK41 RPL27AP8-201ENST00000424277 446 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 OR4K11P-201ENST00000431829 904 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 MTCYBP3-201ENST00000445588 1137 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 RPS3AP46-201ENST00000448352 682 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 HSPE1P23-201ENST00000509838 286 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 RN7SKP209-201ENST00000516888 304 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 DEFB108D-201ENST00000527787 222 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS28Q9UK41 AC008011.1-201ENST00000545989 227 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 AC009094.1-201ENST00000564443 426 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 AC055876.1-202ENST00000567053 138 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 AC034268.2-201ENST00000571784 482 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 ISCA1P3-201ENST00000577104 373 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 AC021171.1-201ENST00000603137 706 ntBASIC3.78□□□□□ -1.8
VPS28Q9UK41 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS28Q9UK41 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS28Q9UK41 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms