Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AL391497.1-201ENST00000608671 547 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AP000240.1-201ENST00000609910 452 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AC245297.2-201ENST00000610119 565 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AC005344.1-201ENST00000613391 459 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AL357080.1-201ENST00000617394 239 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AL596245.1-201ENST00000618994 362 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AL353748.2-201ENST00000622148 471 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 AC006927.4-201ENST00000639187 543 ntBASIC3.25□□□□□ -1.89
DDX28Q9NUL7 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
DDX28Q9NUL7 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AP004289.2-201ENST00000444413 1457 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 RNU6-28P-201ENST00000362378 107 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 SNORA63.1-201ENST00000362493 131 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 RNU6-1155P-201ENST00000363554 107 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 MIR30B-201ENST00000384850 88 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 RPL17P50-201ENST00000396131 546 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 RPL23AP29-201ENST00000397284 453 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AL137014.1-201ENST00000420490 1226 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 HSPE1P1-201ENST00000421494 318 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 SDCBPP1-201ENST00000440192 890 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 NOTCH2P1-201ENST00000443481 624 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 UBDP1-202ENST00000457888 382 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 RPL7P18-201ENST00000478965 734 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC068724.1-201ENST00000487100 792 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 FAM172BP-201ENST00000487497 1089 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC020893.1-201ENST00000502452 580 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC010587.2-201ENST00000511727 448 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 SNORA31.8-201ENST00000516327 108 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 MTCO2P15-201ENST00000532655 656 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AL121766.1-201ENST00000547436 487 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AL031176.1-201ENST00000604554 466 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AL390208.1-201ENST00000605885 644 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC007349.4-201ENST00000608114 532 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC069200.1-201ENST00000609511 323 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 VIS1.1-201ENST00000610517 203 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC012314.7-201ENST00000619693 93 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AC012442.3-202ENST00000636742 206 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 CRYM-AS1-204ENST00000637983 556 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 AP000553.6-201ENST00000641242 118 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 FAM35CP-201ENST00000554755 2470 ntBASIC3.24□□□□□ -1.89
DDX28Q9NUL7 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.24□□□□□ -1.89
DDX28Q9NUL7 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 API5P2-201ENST00000397055 1498 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 RNU6-952P-201ENST00000391164 108 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 RNU1-101P-201ENST00000391171 127 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC126124.2-201ENST00000413542 321 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 HMGB1P49-201ENST00000418882 569 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AL139247.1-201ENST00000422768 325 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AL953862.1-201ENST00000423016 168 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 MTCO1P39-201ENST00000426148 480 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC079780.1-201ENST00000428259 207 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 RPL31P50-201ENST00000471002 296 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC108729.1-201ENST00000487812 947 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC093278.1-201ENST00000494700 600 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC020699.1-201ENST00000505161 445 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC021146.8-201ENST00000507455 733 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 SNORA64.4-201ENST00000516632 81 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 RNA5SP380-201ENST00000517190 98 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
DDX28Q9NUL7 SNRPGP16-201ENST00000533275 226 ntBASIC3.23□□□□□ -1.89
DDX28Q9NUL7 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms