Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MIR2682-201ENST00000580305 110 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AP001029.3-201ENST00000588063 596 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC103881.1-201ENST00000603476 538 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC024257.5-201ENST00000612739 531 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 MESTIT1_2.1-201ENST00000616328 235 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC092650.2-201ENST00000619984 902 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC091046.2-201ENST00000620775 665 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC006111.3-201ENST00000622137 383 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 MIR622-201ENST00000638396 96 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC013437.2-201ENST00000639587 677 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 LINC02211-204ENST00000642024 1070 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 AC093831.2-201ENST00000624393 3427 ntBASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC54Q8NEL0 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 RNU1-33P-201ENST00000364249 162 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 SNORA51.4-201ENST00000364993 124 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 Y_RNA.548-201ENST00000384656 105 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 RNU6-821P-201ENST00000390995 107 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 RNU6-712P-201ENST00000410558 100 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AL356320.2-201ENST00000417263 507 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 SSXP9-201ENST00000417503 292 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC007435.1-201ENST00000421086 415 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 RPF2P1-201ENST00000424137 906 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 MTCO2P23-201ENST00000425216 680 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 DPRXP1-201ENST00000426312 460 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 OFD1P12Y-201ENST00000427963 1207 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 OFD1P13Y-201ENST00000431179 1232 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 SNRPEP4-201ENST00000435815 279 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AL358794.1-201ENST00000445689 381 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 VN1R10P-201ENST00000447106 875 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC092757.1-201ENST00000467293 467 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC004062.1-201ENST00000509926 645 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC126177.3-201ENST00000551839 688 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC245036.5-201ENST00000596330 847 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 CKS1BP3-201ENST00000600888 237 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC069545.1-201ENST00000605671 358 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AL139022.2-201ENST00000606934 443 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 PART1_2.1-201ENST00000612397 250 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AC138932.5-201ENST00000617759 563 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AP000676.4-201ENST00000624659 623 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 U6.101-201ENST00000637707 76 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 AL445984.1-201ENST00000637834 659 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 ZNF663P-202ENST00000641770 1131 ntBASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC54Q8NEL0 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 Z99496.1-201ENST00000469424 1477 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 RNU6-216P-201ENST00000363282 104 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 RNVU1-3-201ENST00000364313 161 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 SNORD116.1-201ENST00000365628 92 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 SNORD116-12-201ENST00000384468 92 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 DHFRP6-201ENST00000401776 268 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 RPL7P25-201ENST00000404151 721 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 RNA5SP80-201ENST00000410475 111 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 RNU4-47P-201ENST00000410876 114 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 RN7SKP58-201ENST00000411010 305 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 BMS1P22-201ENST00000414726 313 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 HSFY4P-201ENST00000415994 1181 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 ATG3P1-201ENST00000419507 911 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 USP9YP36-201ENST00000424581 829 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 MTATP6P4-201ENST00000427725 675 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AL390023.1-201ENST00000428836 262 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 SAR1AP4-201ENST00000429225 591 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC004854.1-201ENST00000440356 349 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 RPL26P28-201ENST00000451325 435 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 USP9YP34-201ENST00000453983 808 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 snoU13.4-201ENST00000458916 104 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC096751.1-202ENST00000502691 1067 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC114322.1-201ENST00000506771 926 ntBASIC2.73□□□□□ -1.97
CCDC54Q8NEL0 AC021146.8-201ENST00000507455 733 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms