Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.25□□□□□ -1.89
CDX1P47902 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.25□□□□□ -1.89
CDX1P47902 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.25□□□□□ -1.89
CDX1P47902 RN7SL600P-201ENST00000581811 299 ntBASIC3.25□□□□□ -1.89
CDX1P47902 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.25□□□□□ -1.89
CDX1P47902 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.25□□□□□ -1.89
CDX1P47902 AC008751.2-201ENST00000597885 980 ntBASIC3.25□□□□□ -1.89
CDX1P47902 AC018638.7-201ENST00000605836 1114 ntBASIC3.25□□□□□ -1.89
CDX1P47902 RNU4-89P-201ENST00000607443 133 ntBASIC3.25□□□□□ -1.89
CDX1P47902 AC107214.2-201ENST00000608204 634 ntBASIC3.25□□□□□ -1.89
CDX1P47902 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.25□□□□□ -1.89
CDX1P47902 MIR6130-201ENST00000619419 109 ntBASIC3.25□□□□□ -1.89
CDX1P47902 AC243312.2-201ENST00000623340 601 ntBASIC3.25□□□□□ -1.89
CDX1P47902 AC079597.1-201ENST00000624306 508 ntBASIC3.25□□□□□ -1.89
CDX1P47902 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.25□□□□□ -1.89
CDX1P47902 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.25□□□□□ -1.89
CDX1P47902 AP001148.1-201ENST00000624124 2359 ntBASIC3.25□□□□□ -1.89
CDX1P47902 AC006504.1-201ENST00000562493 3666 ntBASIC3.25□□□□□ -1.89
CDX1P47902 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
CDX1P47902 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
CDX1P47902 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CDX1P47902 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CDX1P47902 AC092326.2-201ENST00000624772 1561 ntBASIC3.25□□□□□ -1.89
CDX1P47902 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CDX1P47902 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CDX1P47902 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.24□□□□□ -1.89
CDX1P47902 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.24□□□□□ -1.89
CDX1P47902 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CDX1P47902 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CDX1P47902 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
CDX1P47902 RNU6-637P-201ENST00000384050 107 ntBASIC3.24□□□□□ -1.89
CDX1P47902 RNU1-13P-201ENST00000384499 162 ntBASIC3.24□□□□□ -1.89
CDX1P47902 SNORA37-201ENST00000384504 129 ntBASIC3.24□□□□□ -1.89
CDX1P47902 SNORA57.1-201ENST00000391227 145 ntBASIC3.24□□□□□ -1.89
CDX1P47902 AL591034.1-201ENST00000407447 340 ntBASIC3.24□□□□□ -1.89
CDX1P47902 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.24□□□□□ -1.89
CDX1P47902 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 MTATP6P4-201ENST00000427725 675 ntBASIC3.24□□□□□ -1.89
CDX1P47902 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.24□□□□□ -1.89
CDX1P47902 AL500522.2-201ENST00000448562 343 ntBASIC3.24□□□□□ -1.89
CDX1P47902 RPS17P13-201ENST00000448974 407 ntBASIC3.24□□□□□ -1.89
CDX1P47902 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.24□□□□□ -1.89
CDX1P47902 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 OR6K1P-201ENST00000456766 971 ntBASIC3.24□□□□□ -1.89
CDX1P47902 FTH1P2-201ENST00000466086 412 ntBASIC3.24□□□□□ -1.89
CDX1P47902 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.24□□□□□ -1.89
CDX1P47902 AC078785.3-201ENST00000476607 425 ntBASIC3.24□□□□□ -1.89
CDX1P47902 RPS3AP22-201ENST00000488297 769 ntBASIC3.24□□□□□ -1.89
CDX1P47902 RN7SL604P-201ENST00000492589 296 ntBASIC3.24□□□□□ -1.89
CDX1P47902 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CDX1P47902 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.24□□□□□ -1.89
CDX1P47902 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.24□□□□□ -1.89
CDX1P47902 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.24□□□□□ -1.89
CDX1P47902 HMGN1P28-201ENST00000521340 364 ntBASIC3.24□□□□□ -1.89
CDX1P47902 AC093331.1-201ENST00000521474 169 ntBASIC3.24□□□□□ -1.89
CDX1P47902 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CDX1P47902 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.24□□□□□ -1.89
CDX1P47902 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.24□□□□□ -1.89
CDX1P47902 AC007954.1-201ENST00000554198 494 ntBASIC3.24□□□□□ -1.89
CDX1P47902 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.24□□□□□ -1.89
CDX1P47902 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.24□□□□□ -1.89
CDX1P47902 AC055876.1-202ENST00000567053 138 ntBASIC3.24□□□□□ -1.89
CDX1P47902 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 COX6CP3-201ENST00000580869 223 ntBASIC3.24□□□□□ -1.89
CDX1P47902 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 AL110115.1-201ENST00000614396 364 ntBASIC3.24□□□□□ -1.89
CDX1P47902 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.24□□□□□ -1.89
CDX1P47902 AC099063.3-201ENST00000642066 185 ntBASIC3.24□□□□□ -1.89
CDX1P47902 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
CDX1P47902 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
CDX1P47902 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
CDX1P47902 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.23□□□□□ -1.89
CDX1P47902 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 IPO8P1-201ENST00000455509 3109 ntBASIC3.23□□□□□ -1.89
CDX1P47902 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 DEFB108F-201ENST00000344638 222 ntBASIC3.23□□□□□ -1.89
CDX1P47902 SNORA60-201ENST00000362396 134 ntBASIC3.23□□□□□ -1.89
CDX1P47902 RNA5SP295-201ENST00000362655 121 ntBASIC3.23□□□□□ -1.89
CDX1P47902 RNU6-660P-201ENST00000364566 109 ntBASIC3.23□□□□□ -1.89
CDX1P47902 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.23□□□□□ -1.89
CDX1P47902 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 MIR1193-201ENST00000408109 78 ntBASIC3.23□□□□□ -1.89
CDX1P47902 RNU6-516P-201ENST00000411381 104 ntBASIC3.23□□□□□ -1.89
CDX1P47902 AL359704.1-201ENST00000411586 781 ntBASIC3.23□□□□□ -1.89
CDX1P47902 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.23□□□□□ -1.89
CDX1P47902 AL356095.1-201ENST00000417217 199 ntBASIC3.23□□□□□ -1.89
CDX1P47902 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.23□□□□□ -1.89
CDX1P47902 RPL21P32-201ENST00000419877 477 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms