Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CDX2Q99626 AL161781.1-201ENST00000354277 403 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 RNA5SP27-201ENST00000363839 119 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 RNU6-76P-201ENST00000384060 104 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 RPL23AP47-201ENST00000408017 460 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 NUP35P2-201ENST00000416748 943 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC2.88□□□□□ -1.95
CDX2Q99626 AC009414.1-201ENST00000427200 443 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 AL512661.1-201ENST00000434586 1253 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 HIGD1AP2-201ENST00000446367 280 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 snoU13.7-201ENST00000459220 104 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CDX2Q99626 AC015724.1-201ENST00000478577 156 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 RPL23AP44-201ENST00000482216 473 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC2.88□□□□□ -1.95
CDX2Q99626 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.88□□□□□ -1.95
CDX2Q99626 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.88□□□□□ -1.95
CDX2Q99626 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC2.88□□□□□ -1.95
CDX2Q99626 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CDX2Q99626 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC2.88□□□□□ -1.95
CDX2Q99626 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC2.88□□□□□ -1.95
CDX2Q99626 AC016065.2-201ENST00000514530 444 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 OR8K2P-201ENST00000524645 927 ntBASIC2.88□□□□□ -1.95
CDX2Q99626 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.88□□□□□ -1.95
CDX2Q99626 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.88□□□□□ -1.95
CDX2Q99626 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2.88□□□□□ -1.95
CDX2Q99626 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.88□□□□□ -1.95
CDX2Q99626 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
CDX2Q99626 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
CDX2Q99626 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
CDX2Q99626 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
CDX2Q99626 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CDX2Q99626 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CDX2Q99626 RPL21P132-201ENST00000331267 462 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 RNU6-1159P-201ENST00000362933 107 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 Y_RNA.140-201ENST00000363474 103 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC2.87□□□□□ -1.95
CDX2Q99626 RPL23AP36-201ENST00000413895 458 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 AL606495.1-201ENST00000422100 813 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.87□□□□□ -1.95
CDX2Q99626 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.87□□□□□ -1.95
CDX2Q99626 HMGB1P12-201ENST00000438594 598 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.87□□□□□ -1.95
CDX2Q99626 AC006539.3-201ENST00000454258 129 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.87□□□□□ -1.95
CDX2Q99626 CYCSP20-201ENST00000473154 315 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 AC012181.1-201ENST00000479895 423 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CDX2Q99626 RFESD-208ENST00000513950 464 ntTSL 5 BASIC2.87□□□□□ -1.95
CDX2Q99626 ZKSCAN7P1-201ENST00000543668 673 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 OR6C73P-201ENST00000546432 358 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 CENPUP2-201ENST00000555897 1186 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC2.87□□□□□ -1.95
CDX2Q99626 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.87□□□□□ -1.95
CDX2Q99626 FAM157B-203ENST00000639350 358 ntBASIC2.87□□□□□ -1.95
CDX2Q99626 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.87□□□□□ -1.95
CDX2Q99626 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.86□□□□□ -1.95
CDX2Q99626 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
CDX2Q99626 MIR30E-201ENST00000362104 92 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 RNU6-14P-201ENST00000384630 106 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CDX2Q99626 AC093422.3-201ENST00000428506 305 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 AL356320.1-201ENST00000429616 163 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 FCF1P1-201ENST00000432690 571 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 RPS26P30-201ENST00000443431 335 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 Z77249.1-201ENST00000444622 1175 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 MTND1P33-201ENST00000446251 917 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC2.86□□□□□ -1.95
CDX2Q99626 RN7SL499P-201ENST00000481141 276 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 NCOR1P1-202ENST00000486162 291 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.86□□□□□ -1.95
CDX2Q99626 AC025768.1-201ENST00000510057 267 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 RN7SKP277-201ENST00000516895 283 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC2.86□□□□□ -1.95
CDX2Q99626 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.86□□□□□ -1.95
CDX2Q99626 AC011602.1-201ENST00000546484 331 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.86□□□□□ -1.95
CDX2Q99626 OR4T1P-201ENST00000554933 911 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 AL391156.1-201ENST00000554965 554 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC2.86□□□□□ -1.95
CDX2Q99626 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.86□□□□□ -1.95
CDX2Q99626 AC096586.1-201ENST00000610267 561 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 AC073569.3-201ENST00000619055 682 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 AL356118.1-201ENST00000635272 1078 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.86□□□□□ -1.95
CDX2Q99626 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CDX2Q99626 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
CDX2Q99626 AP000526.1-201ENST00000603308 1388 ntBASIC2.86□□□□□ -1.95
CDX2Q99626 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.85□□□□□ -1.95
CDX2Q99626 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CDX2Q99626 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.85□□□□□ -1.95
CDX2Q99626 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CDX2Q99626 RNU6-1339P-201ENST00000363574 91 ntBASIC2.85□□□□□ -1.95
CDX2Q99626 Y_RNA.355-201ENST00000365462 98 ntBASIC2.85□□□□□ -1.95
CDX2Q99626 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.85□□□□□ -1.95
CDX2Q99626 AP002088.1-201ENST00000382740 395 ntBASIC2.85□□□□□ -1.95
CDX2Q99626 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CDX2Q99626 RNU6-55P-201ENST00000411092 107 ntBASIC2.85□□□□□ -1.95
CDX2Q99626 RNU6-954P-201ENST00000411355 107 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms