Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 RNA5SP337-201ENST00000517007 109 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC5.64□□□□□ -1.51
USP48Q86UV5 IGKV2D-36-201ENST00000518643 226 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC5.64□□□□□ -1.51
USP48Q86UV5 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC5.64□□□□□ -1.51
USP48Q86UV5 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.64□□□□□ -1.51
USP48Q86UV5 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.64□□□□□ -1.51
USP48Q86UV5 AC090616.5-202ENST00000582111 297 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AC060780.3-201ENST00000589464 80 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 KC877982.1-201ENST00000602313 470 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 BNIP3P9-201ENST00000603714 553 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AL451044.1-201ENST00000604867 238 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AL049634.3-201ENST00000604968 457 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AC245389.1-201ENST00000605141 529 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AC112204.3-201ENST00000623822 332 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 AC091925.2-201ENST00000625059 256 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 RPS4XP5-202ENST00000449995 1334 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP48Q86UV5 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.64□□□□□ -1.51
USP48Q86UV5 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP48Q86UV5 DDX18P3-201ENST00000404856 2007 ntBASIC5.64□□□□□ -1.51
USP48Q86UV5 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP48Q86UV5 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP48Q86UV5 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP48Q86UV5 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.63□□□□□ -1.51
USP48Q86UV5 AL592437.2-201ENST00000421655 2434 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 TLK1P1-201ENST00000456760 2440 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 MAPK10-349ENST00000641767 3661 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 RNU6-108P-201ENST00000365558 107 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.63□□□□□ -1.51
USP48Q86UV5 AL445189.1-201ENST00000405722 338 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 U3.35-201ENST00000408405 208 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.63□□□□□ -1.51
USP48Q86UV5 RN7SKP267-201ENST00000410381 285 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 EIF4A1P3-201ENST00000411521 244 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC5.63□□□□□ -1.51
USP48Q86UV5 RPS12P5-201ENST00000423449 371 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 AC012498.1-201ENST00000424037 437 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.63□□□□□ -1.51
USP48Q86UV5 GPR143P-201ENST00000434155 205 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 RPS17P8-201ENST00000434525 335 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 AC093156.1-201ENST00000440382 670 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.63□□□□□ -1.51
USP48Q86UV5 MTND1P9-201ENST00000453775 944 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 RPL36AP51-201ENST00000487216 318 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC5.63□□□□□ -1.51
USP48Q86UV5 AC015795.1-201ENST00000513669 327 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.63□□□□□ -1.51
USP48Q86UV5 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC5.63□□□□□ -1.51
USP48Q86UV5 HIGD1AP3-201ENST00000515857 278 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 MRPL49P2-201ENST00000521066 465 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.63□□□□□ -1.51
USP48Q86UV5 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC5.63□□□□□ -1.51
USP48Q86UV5 AC068446.3-201ENST00000555285 382 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC5.63□□□□□ -1.51
USP48Q86UV5 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.63□□□□□ -1.51
USP48Q86UV5 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC5.63□□□□□ -1.51
USP48Q86UV5 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.63□□□□□ -1.51
USP48Q86UV5 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC5.63□□□□□ -1.51
USP48Q86UV5 SNORD91B-202ENST00000608459 222 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 uc_338.12-201ENST00000616344 181 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 AC034229.5-201ENST00000624258 185 ntBASIC5.63□□□□□ -1.51
USP48Q86UV5 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.63□□□□□ -1.51
USP48Q86UV5 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP48Q86UV5 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC5.63□□□□□ -1.51
USP48Q86UV5 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP48Q86UV5 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP48Q86UV5 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP48Q86UV5 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.62□□□□□ -1.51
USP48Q86UV5 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
USP48Q86UV5 OR14L1P-202ENST00000641545 3009 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 ZNF33CP-201ENST00000432492 2030 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.62□□□□□ -1.51
USP48Q86UV5 AC105074.1-201ENST00000623380 3095 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.62□□□□□ -1.51
USP48Q86UV5 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
USP48Q86UV5 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 RNU6-1120P-201ENST00000362988 108 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 RNU6-1097P-201ENST00000363586 107 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 RN7SKP280-201ENST00000364196 304 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 RNU6-169P-201ENST00000365336 107 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
USP48Q86UV5 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.62□□□□□ -1.51
USP48Q86UV5 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC5.62□□□□□ -1.51
USP48Q86UV5 RPS29P17-201ENST00000430795 166 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 TIMM9P1-201ENST00000436122 256 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 CALM1P1-201ENST00000442082 433 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC5.62□□□□□ -1.51
USP48Q86UV5 AP000852.1-201ENST00000472460 573 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 RN7SL558P-201ENST00000497468 299 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 STMN1P2-201ENST00000508435 439 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.62□□□□□ -1.51
USP48Q86UV5 RN7SKP234-201ENST00000517173 224 ntBASIC5.62□□□□□ -1.51
USP48Q86UV5 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.62□□□□□ -1.51
USP48Q86UV5 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP48Q86UV5 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms