Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.77□□□□□ -1.65
CBX4O00257 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.77□□□□□ -1.65
CBX4O00257 AC108467.2-201ENST00000617640 1597 ntBASIC4.77□□□□□ -1.65
CBX4O00257 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
CBX4O00257 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
CBX4O00257 AC022893.2-201ENST00000564832 3296 ntBASIC4.77□□□□□ -1.65
CBX4O00257 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
CBX4O00257 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.76□□□□□ -1.65
CBX4O00257 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CBX4O00257 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
CBX4O00257 ZNF680P1-201ENST00000436625 1469 ntBASIC4.76□□□□□ -1.65
CBX4O00257 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CBX4O00257 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CBX4O00257 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.76□□□□□ -1.65
CBX4O00257 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.76□□□□□ -1.65
CBX4O00257 RNU6-637P-201ENST00000384050 107 ntBASIC4.76□□□□□ -1.65
CBX4O00257 MT-TL1-201ENST00000386347 75 ntBASIC4.76□□□□□ -1.65
CBX4O00257 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CBX4O00257 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CBX4O00257 AL080315.1-201ENST00000406055 466 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.76□□□□□ -1.65
CBX4O00257 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CBX4O00257 AL137014.1-201ENST00000420490 1226 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AL732292.1-201ENST00000426692 226 ntBASIC4.76□□□□□ -1.65
CBX4O00257 ZNF863P-201ENST00000426746 417 ntBASIC4.76□□□□□ -1.65
CBX4O00257 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.76□□□□□ -1.65
CBX4O00257 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.76□□□□□ -1.65
CBX4O00257 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.76□□□□□ -1.65
CBX4O00257 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.76□□□□□ -1.65
CBX4O00257 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.76□□□□□ -1.65
CBX4O00257 PPIAP3-201ENST00000450588 505 ntBASIC4.76□□□□□ -1.65
CBX4O00257 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.76□□□□□ -1.65
CBX4O00257 RNU6-261P-201ENST00000459506 102 ntBASIC4.76□□□□□ -1.65
CBX4O00257 RPL36AP41-201ENST00000493820 306 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.76□□□□□ -1.65
CBX4O00257 STMN1P2-201ENST00000508435 439 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AC098799.2-201ENST00000509466 868 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.76□□□□□ -1.65
CBX4O00257 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.76□□□□□ -1.65
CBX4O00257 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.76□□□□□ -1.65
CBX4O00257 AC025465.4-201ENST00000513422 638 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AC114797.1-201ENST00000514003 728 ntBASIC4.76□□□□□ -1.65
CBX4O00257 RNU2-10P-201ENST00000516375 211 ntBASIC4.76□□□□□ -1.65
CBX4O00257 SNORA20.3-201ENST00000516880 132 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.76□□□□□ -1.65
CBX4O00257 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.76□□□□□ -1.65
CBX4O00257 TOMM20P2-201ENST00000540082 421 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.76□□□□□ -1.65
CBX4O00257 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.76□□□□□ -1.65
CBX4O00257 AC105129.1-201ENST00000560250 297 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AC034105.3-201ENST00000565294 442 ntBASIC4.76□□□□□ -1.65
CBX4O00257 DHX40P1-201ENST00000588725 1412 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.76□□□□□ -1.65
CBX4O00257 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CBX4O00257 IGHV3-29-201ENST00000604817 344 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AL603758.1-201ENST00000618654 241 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AC006065.6-201ENST00000625201 545 ntBASIC4.76□□□□□ -1.65
CBX4O00257 U3.53-201ENST00000628922 216 ntBASIC4.76□□□□□ -1.65
CBX4O00257 MIR6830-201ENST00000636015 70 ntBASIC4.76□□□□□ -1.65
CBX4O00257 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CBX4O00257 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.76□□□□□ -1.65
CBX4O00257 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.76□□□□□ -1.65
CBX4O00257 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.76□□□□□ -1.65
CBX4O00257 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.76□□□□□ -1.65
CBX4O00257 ZNF137P-201ENST00000456718 1920 ntBASIC4.76□□□□□ -1.65
CBX4O00257 AC090229.1-201ENST00000590983 1609 ntBASIC4.75□□□□□ -1.65
CBX4O00257 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.75□□□□□ -1.65
CBX4O00257 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.75□□□□□ -1.65
CBX4O00257 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 Y_RNA.38-201ENST00000362617 102 ntBASIC4.75□□□□□ -1.65
CBX4O00257 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.75□□□□□ -1.65
CBX4O00257 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
CBX4O00257 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
CBX4O00257 AC068050.1-201ENST00000394891 380 ntBASIC4.75□□□□□ -1.65
CBX4O00257 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.75□□□□□ -1.65
CBX4O00257 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.75□□□□□ -1.65
CBX4O00257 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC4.75□□□□□ -1.65
CBX4O00257 OR2AH1P-201ENST00000425717 928 ntBASIC4.75□□□□□ -1.65
CBX4O00257 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.75□□□□□ -1.65
CBX4O00257 RPL23AP1-201ENST00000428990 471 ntBASIC4.75□□□□□ -1.65
CBX4O00257 USP12PX-201ENST00000432383 1057 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AL606489.2-201ENST00000433886 234 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.75□□□□□ -1.65
CBX4O00257 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.75□□□□□ -1.65
CBX4O00257 snoU13.3-201ENST00000459441 104 ntBASIC4.75□□□□□ -1.65
CBX4O00257 RN7SL41P-201ENST00000476144 297 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.75□□□□□ -1.65
CBX4O00257 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CBX4O00257 AC068305.1-201ENST00000497406 726 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AC108475.1-201ENST00000507880 950 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AC008694.2-201ENST00000517591 306 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.75□□□□□ -1.65
CBX4O00257 AP001646.1-201ENST00000527936 915 ntBASIC4.75□□□□□ -1.65
CBX4O00257 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.75□□□□□ -1.65
CBX4O00257 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms