Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 SNORD115-35-201ENST00000365122 82 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 SS18L2P1-201ENST00000445923 213 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 RN7SL221P-201ENST00000466190 281 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 AL132838.2-201ENST00000492041 314 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 TOMM22P4-201ENST00000511318 336 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 MIR3157-201ENST00000578688 85 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 AC011471.1-201ENST00000585766 187 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 AC012368.3-201ENST00000604190 219 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 AP003357.1-201ENST00000604497 148 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 MIR6798-201ENST00000612887 67 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 AL162726.3-218ENST00000636401 95 ntBASIC10.36□□□□□ -0.75
SENP3Q9H4L4 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 DCAF5-208ENST00000556847 2791 ntTSL 5 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 NUDT13-202ENST00000357321 2102 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
SENP3Q9H4L4 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 CEBPG-202ENST00000585933 3845 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 METTL2A-204ENST00000616852 3150 ntTSL 2 BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 EIF4BP5-201ENST00000567338 1795 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 Y_RNA.190-201ENST00000363964 101 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 RNU1-55P-201ENST00000365510 158 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 Y_RNA.545-201ENST00000384652 105 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 RN7SKP61-201ENST00000410642 295 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 RNA5SP155-201ENST00000411154 129 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 RNU6-938P-201ENST00000411285 103 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 AL389915.2-201ENST00000454576 441 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 RN7SL393P-201ENST00000463588 296 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 COX6B1P5-201ENST00000509843 249 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 AC087894.3-201ENST00000623682 349 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 AC009108.3-201ENST00000602739 3515 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 ZNF350-201ENST00000243644 2338 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 AC010889.1-201ENST00000566193 2666 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 MGC15885-201ENST00000558940 2425 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 HSP90AA2P-201ENST00000530115 2196 ntBASIC10.35□□□□□ -0.75
SENP3Q9H4L4 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.35□□□□□ -0.75
SENP3Q9H4L4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 RN7SKP55-201ENST00000364888 307 ntBASIC10.34□□□□□ -0.75
SENP3Q9H4L4 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 AC005017.1-201ENST00000482002 490 ntBASIC10.34□□□□□ -0.75
SENP3Q9H4L4 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 MIR378C-201ENST00000578683 81 ntBASIC10.34□□□□□ -0.75
SENP3Q9H4L4 AL365205.2-201ENST00000594586 68 ntBASIC10.34□□□□□ -0.75
SENP3Q9H4L4 AC145423.2-201ENST00000610631 239 ntBASIC10.34□□□□□ -0.75
SENP3Q9H4L4 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 CNTN4-201ENST00000397459 2322 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
SENP3Q9H4L4 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 BMX-203ENST00000357607 2598 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 DAZ2-207ENST00000382449 3791 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 KIAA0753-201ENST00000361413 4859 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 RNU6-1141P-201ENST00000364520 107 ntBASIC10.33□□□□□ -0.76
SENP3Q9H4L4 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 BTF3P4-201ENST00000418852 495 ntBASIC10.33□□□□□ -0.76
SENP3Q9H4L4 AL139281.1-201ENST00000422120 335 ntBASIC10.33□□□□□ -0.76
SENP3Q9H4L4 AC004941.2-201ENST00000427009 228 ntBASIC10.33□□□□□ -0.76
SENP3Q9H4L4 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 NDUFS5P3-201ENST00000450668 321 ntBASIC10.33□□□□□ -0.76
SENP3Q9H4L4 AC002368.1-201ENST00000456981 388 ntTSL 3 BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 IGLVVII-41-1-201ENST00000518405 151 ntBASIC10.33□□□□□ -0.76
SENP3Q9H4L4 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC10.33□□□□□ -0.76
SENP3Q9H4L4 LPAR1-202ENST00000374430 2993 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 KCNK2-203ENST00000444842 3379 ntAPPRIS ALT1 TSL 1 (best) BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 DHFR2-201ENST00000314636 3927 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 FRMD7-203ENST00000464296 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
SENP3Q9H4L4 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms